Nfla005523.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986040.1:141854630-141859433[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5.8e-05 0.0021 18.9 0.6 1 23 170 193 170 193 0.98 2 14 0.37 14 6.9 4.1 1 19 197 215 197 216 0.97 3 14 1 38 5.6 1.7 2 20 221 239 220 241 0.94 4 14 0.0045 0.17 13.0 3.4 2 23 247 268 246 268 0.97 5 14 3.6e-06 0.00013 22.7 0.9 1 23 273 295 273 295 0.96 6 14 1.2 45 5.3 1.0 1 9 301 309 301 309 0.92 7 14 3.2e-06 0.00012 22.9 2.2 1 23 311 333 311 333 0.98 8 14 0.057 2.1 9.5 2.7 1 13 339 351 339 352 0.92 9 14 1.1e-06 4.1e-05 24.3 1.8 3 23 361 381 359 381 0.96 10 14 0.00018 0.0067 17.4 0.5 1 23 387 409 387 409 0.95 11 14 2.8e-05 0.001 19.9 3.3 1 23 415 437 415 437 0.98 12 14 3.9e-06 0.00014 22.6 2.4 1 23 443 465 443 465 0.98 13 14 4.3e-06 0.00016 22.5 1.8 1 23 471 493 471 493 0.98 14 14 2.1e-06 7.8e-05 23.4 4.2 1 23 499 521 499 521 0.99
Sequence Information
- Coding Sequence
- ATGGAGAATAAAGTAATTGATTTGAatgattttgaaattgtttgcAGAATTTGTTtagataaaaaagaaaaaatgatttcaatGTTGGAAAACTCTTTACTTCcaaatttaatcaaaacatACAGAGAAATGATAGAAGAGTGTGCCTCAGTGCAGATTTCTACTAATGATTCGTTACCGAAAAACATCTGTTTGGAATGCataaaatatttggaaatatcttataaatttaaaaatcaatgtttATCAACGGAAAAATTATTAGAACAAATGATTGCAAACGCACAGACAAACATAAAAGTTGAATATGTCAATGATGAAAGCCATGACTTAAAAAATGAAGATAAttcttattcattttttattttgaatggaGATAATCTAAATGAAATATCCCAAAATGATGTTACCAAAAAAGAATTCGATACTGTGAAAGAAGAATTAATTAAGGATACAAATAGAGAATTAAATGATAATGATTTAAAAGATGACAGTACTGTACAAAAGTATAAATGTGAAGAGTGTGGAAAAGGTTTCAAATTAAAAGTTGAAGTTTATAAACATCTAAAACGTGTGCACTCGAAAGCCTTCAAGTGTATGTTCTGTGATAAAAGTTATAAATGTTCGTATGATTTAATGAAACATTCACCGGAAGTAGTTCAATGTAAAATCTGTACACAAGATTATGGATGTAAAAGTAATTTAAGAAATCATGTACACGAAGAGCTCAAGCACACAACGTGCAAAATATGTGGcaagatatttcaaaataaaaaatcatgcaATCGACATGTAGCGaCACATGGAGGCAGACGTTATTTATGCACTTTTTGTGGGAAAGCATTTGCAGATAAAACGAATTATAATGTGCATTTACGAAGAcacacgggagaaaaaccatacCAGTGTCCTCAATGTggtaaACGGAATTTTGTTTGCAAATACTGTAATAAAGCATTTATGAAAAcggataatttaaaaatgcattTACGAACTCATACCGGTGAAAAACCGTTTACTTGTAGCAAATGTGGAAAAAGTTATAGCCAGAAACATATTCATGGAGATAAACGTCATTTATGCACCTATTGCGGGAAAGCATTTACAGATAAAGGGAATTATTCAGTTCATCTACGAACTCATACGggagaaaaaaaatatcaatgcaCTCAATGTGatgcaaaatttattaacagtGATGGTTTACGAAAACATTCGGTATCGCATTCAGACGAAAGAaaatttcaatgtgaaatttgtaaaaaaacgtATAAGCGTCAAGAAACGTTAATCAGCCATAGACATATACATATGGAAGGCGTCAATTATTcttgtgatatttgtaataaacaatttaaaagaaaGGACACTTTACGTGACCATAAAAAAATCCATACAGGCGAACGAAATTATATTTGTACATACTGTAATAAAGCATTTATGAAAAcggataatttaaaaatgcatttacgaactcatacaggagaaaaaccGTTCACGTGTGGCAAATGTGGAAAAAGGTTTAGTCAGAAACATGTACTTAACAGTCATATGAAAACACATTTCGAATTACCGGAATAG
- Protein Sequence
- MENKVIDLNDFEIVCRICLDKKEKMISMLENSLLPNLIKTYREMIEECASVQISTNDSLPKNICLECIKYLEISYKFKNQCLSTEKLLEQMIANAQTNIKVEYVNDESHDLKNEDNSYSFFILNGDNLNEISQNDVTKKEFDTVKEELIKDTNRELNDNDLKDDSTVQKYKCEECGKGFKLKVEVYKHLKRVHSKAFKCMFCDKSYKCSYDLMKHSPEVVQCKICTQDYGCKSNLRNHVHEELKHTTCKICGKIFQNKKSCNRHVATHGGRRYLCTFCGKAFADKTNYNVHLRRHTGEKPYQCPQCGKRNFVCKYCNKAFMKTDNLKMHLRTHTGEKPFTCSKCGKSYSQKHIHGDKRHLCTYCGKAFTDKGNYSVHLRTHTGEKKYQCTQCDAKFINSDGLRKHSVSHSDERKFQCEICKKTYKRQETLISHRHIHMEGVNYSCDICNKQFKRKDTLRDHKKIHTGERNYICTYCNKAFMKTDNLKMHLRTHTGEKPFTCGKCGKRFSQKHVLNSHMKTHFELPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -