Basic Information

Insect: Nineta flava
Gene Symbol: -
Assembly: GCA_963920215.1
Location: OY986040.1:21839940-21851559[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0021 0.08 14.0 2.3 1 23 147 169 147 169 0.98

2 15 8.1e-06 0.0003 21.6 1.4 1 23 175 197 175 197 0.98

3 15 0.0049 0.18 12.9 0.9 1 23 203 225 203 225 0.94

4 15 0.00083 0.031 15.3 8.2 1 23 231 253 231 253 0.97

5 15 1.7 65 4.8 1.0 2 23 314 337 313 337 0.91

6 15 2.9 1.1e+02 4.1 4.0 1 21 344 364 344 368 0.90

7 15 0.001 0.038 15.0 1.2 1 23 383 405 383 405 0.97

8 15 7.8e-07 2.9e-05 24.8 1.0 1 23 411 433 411 433 0.98

9 15 2.6e-07 9.7e-06 26.3 3.7 1 23 439 461 439 461 0.98

10 15 1.7e-05 0.00064 20.6 2.3 1 23 470 492 470 492 0.98

11 15 2.9e-05 0.0011 19.9 1.8 1 23 498 520 498 520 0.98

12 15 0.00029 0.011 16.7 4.0 1 23 527 550 527 550 0.97

13 15 4.7e-05 0.0018 19.2 2.0 1 23 556 578 556 578 0.98

14 15 0.00036 0.013 16.4 3.6 1 23 584 606 584 606 0.98

15 15 0.00015 0.0054 17.7 7.9 1 23 612 635 612 635 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0021	0.08	14.0	2.3	1	23	147	169	147	169	0.98
2	15	8.1e-06	0.0003	21.6	1.4	1	23	175	197	175	197	0.98
3	15	0.0049	0.18	12.9	0.9	1	23	203	225	203	225	0.94
4	15	0.00083	0.031	15.3	8.2	1	23	231	253	231	253	0.97
5	15	1.7	65	4.8	1.0	2	23	314	337	313	337	0.91
6	15	2.9	1.1e+02	4.1	4.0	1	21	344	364	344	368	0.90
7	15	0.001	0.038	15.0	1.2	1	23	383	405	383	405	0.97
8	15	7.8e-07	2.9e-05	24.8	1.0	1	23	411	433	411	433	0.98
9	15	2.6e-07	9.7e-06	26.3	3.7	1	23	439	461	439	461	0.98
10	15	1.7e-05	0.00064	20.6	2.3	1	23	470	492	470	492	0.98
11	15	2.9e-05	0.0011	19.9	1.8	1	23	498	520	498	520	0.98
12	15	0.00029	0.011	16.7	4.0	1	23	527	550	527	550	0.97
13	15	4.7e-05	0.0018	19.2	2.0	1	23	556	578	556	578	0.98
14	15	0.00036	0.013	16.4	3.6	1	23	584	606	584	606	0.98
15	15	0.00015	0.0054	17.7	7.9	1	23	612	635	612	635	0.97

Sequence Information

Coding Sequence: atgaatgaaaatttaaaatcattgtgtCGATTATGTGCCGAAATGcatccaataaatactttaattaaaatgagtagtgccaattttgtaaatttaagtctagctgaaaaaatttatcaatattttattgtaactaTTAATGAAAATGACATATTACCAAAAGATATTTGCAATTGTTGCTGTAAAAAAGTACTTGAAACTTATGAATTTCATCAACAAATTCAAAAAGCACAaggtattttacaaacaaaagttgaaatAAAACATGAGCAAATAACTGacgaatataatattaaatctgAAATAAACGAAATTCAAACAGACGATGAAAATTCCAATGATTTCACCTTTAATCATTCACCAGTcgatgatTCAGAAGATGAACCACTCAGCACACGTTTAATCGGTTCCAAAACTACCAGGGTAAGAAaaaatttttttatgtgtgatcAATGTGgaaaatgttggaaaaatcgtgGAGAATTATATTCGCATTTAAAATCTCATGATGAAGAAAGACCTTTTCAATGTGATGAATGCTCTAGaggTTTCAAAACTTTGAGATCATTAAAACGGCACCAATTAATTCATGCTGGTATCAAACCTCATGAATGTTTAACTTGTGGTAAAAAATTTCGTTTACAAGAAATGCTTGTTGTACATTCAACAATCCACACCGGGGAACTTCCACACGAATGTAGTTATTGTAAAAAACGTTttcgacataaaaattttttaaggATACATTTACGTCAACATACGGGAGAACGACCTTATTCTTGTACAGAATggTTTTATGACGATGATGAACCTTTATCAAATCATATTGTTACTAAAACTGAAACAAAAGaTGACTCATTGattgtaaaaaacaatttaattaaaaaatccaaCAACACTATAACTAAAACCAGCAATGAATTACGTAAATATTATTGGAAATGTTTTGAAtgtaaagataaaatatttaaaacaattgagaAATTACGATTACATTTTAAAGATATCCATTATGAAACACCTATACaatatgtttgtataaaatGTTCGCAAAATTTCCATACACTACATGAATTACAATCACATATTCATGAACAACAACATTCAATACATAATGATCAATCGGTGATACAGGTTGGTGATAAATATGTTTGTGATACGTGCAAAAAAGAATTTAGCAGCAGGAAGAATATATTGGTACATCGTTTCATACATTTAGGTATAAAAAGATATTCATGCGATGAATGCGGTAAAAGTTTTATGCAACGtccacatttaaaaaatcatatggCAATACATTCAGATGCAACACCGTTCAGTTGTACCCAATGTCAAAAAAAATTTAAGACAAAAGATAATTTACGTATTCATATGCGAAGTCATGTACCAAAAGAAACACGATTGAAATTCGAGTGTGATGTGTGTCAGAAAAAGTTTACATCGACATcgaatttaaattatcataaaaaaattcattcggGAATTCCAGAATTTACATGTGAATATTGTGGAAAAagttttttgcataaaggaAATTTACAAGAACATACCTTAATCCATTCAACAGATGTTGGATCATATCATTGCGAACAATGCCCTAAAACatttaaaaatatttctcgtTTACGACAGCATCAACTTCGATTTCATAGTCATACAAAACCTCATAAATGTGATATATGTGAGAAAAAGTTTCGTATAAAAAGTGAATTAATCGAACACAAACGAATACATTCGGGTGAATTGCCATTTGAATgtgatttttgtacaaaaaaatttcgtttaaagAAAACCTTAAAGatacATTTACGTCAACATACAGGTGAAAAACCATATTACTGTACGACTTGTAATCATCACTTTACAAATTCCTcgaattataataaacatatgaAAATTCGACATGGTGGAGTTTCAACAGATAATAAAGTCACCACCATTAATAGTACTAAAactaatgttttaaaaatatcctCTTAA
Protein Sequence: MNENLKSLCRLCAEMHPINTLIKMSSANFVNLSLAEKIYQYFIVTINENDILPKDICNCCCKKVLETYEFHQQIQKAQGILQTKVEIKHEQITDEYNIKSEINEIQTDDENSNDFTFNHSPVDDSEDEPLSTRLIGSKTTRVRKNFFMCDQCGKCWKNRGELYSHLKSHDEERPFQCDECSRGFKTLRSLKRHQLIHAGIKPHECLTCGKKFRLQEMLVVHSTIHTGELPHECSYCKKRFRHKNFLRIHLRQHTGERPYSCTEWFYDDDEPLSNHIVTKTETKDDSLIVKNNLIKKSNNTITKTSNELRKYYWKCFECKDKIFKTIEKLRLHFKDIHYETPIQYVCIKCSQNFHTLHELQSHIHEQQHSIHNDQSVIQVGDKYVCDTCKKEFSSRKNILVHRFIHLGIKRYSCDECGKSFMQRPHLKNHMAIHSDATPFSCTQCQKKFKTKDNLRIHMRSHVPKETRLKFECDVCQKKFTSTSNLNYHKKIHSGIPEFTCEYCGKSFLHKGNLQEHTLIHSTDVGSYHCEQCPKTFKNISRLRQHQLRFHSHTKPHKCDICEKKFRIKSELIEHKRIHSGELPFECDFCTKKFRLKKTLKIHLRQHTGEKPYYCTTCNHHFTNSSNYNKHMKIRHGGVSTDNKVTTINSTKTNVLKISS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -