Nfla010274.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986042.1:23355082-23359002[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0029 0.11 13.6 3.3 1 23 34 57 34 57 0.95 2 14 0.0088 0.33 12.1 3.1 1 23 63 85 63 85 0.98 3 14 0.00045 0.017 16.1 1.4 1 23 90 113 90 113 0.96 4 14 0.0058 0.21 12.6 5.1 1 23 126 149 126 149 0.90 5 14 8.2e-05 0.003 18.4 0.1 2 23 154 174 153 174 0.96 6 14 3.8e-06 0.00014 22.7 1.6 1 23 180 202 180 202 0.98 7 14 4.1e-08 1.5e-06 28.8 1.6 1 23 208 230 208 230 0.99 8 14 0.00014 0.0052 17.7 1.8 1 23 251 273 251 273 0.97 9 14 9.3e-05 0.0035 18.3 2.9 1 23 279 301 279 301 0.99 10 14 0.00077 0.028 15.4 3.3 1 23 310 333 310 333 0.97 11 14 0.0029 0.11 13.6 0.4 2 23 339 359 339 359 0.96 12 14 0.007 0.26 12.4 4.4 1 23 365 387 365 387 0.99 13 14 9.7e-06 0.00036 21.4 3.2 1 23 393 415 393 415 0.98 14 14 3.3e-05 0.0012 19.7 3.1 1 23 421 443 421 443 0.99
Sequence Information
- Coding Sequence
- ATGATTAGAGCTTTAAAAGTACCTAGATTATTCTATTTAGAATTAAAAAGCTTGATAAATCGTGATAAGATATCTGGAAATTTAAAAGAAGAACGTATTTTTAATTGTACAGAAtgtaattataaaactaaacatCGTACAAATTTAACAATGCACGTAGAACGGgtccatttaaaaatatacaaataccaTTGTAAAGTTTGTAGAAAAGGattctatttaaataatgattataaaaatcatttattaatacattCCGATACAAAGTACGCCTGTCCCACATGCGATAAAACATACTTATATTCACATAATTTACAAGTACATATTAAAGAGAAACATTCTAATACGAATAATACAATTGAAGAGAAAAAATCATACCCTTGTAATAATTGTACCAAAGTTTTTACATCGCGTCAATGTTTACGTAGCCACAATATTCACAATCATCTATCACGTATAGTATGCGCCGTTTGTGGTAAATCATTTACACCGATCTATCTTCAAGAACATATGCGTTTACATTTACAACAAAAAGATTTCCAGTGTACAATTTGTGATAAGAAATTTTCAATCAGTCGATATTTACAACAACATATGGTGacacattcaaatttaaaaccgTATAAATGTGAACAATGTGGTAAAATGTTTACACAACGTAGTTCGCTAACTGTACATTATCGTATCCATACGGATAATAAACCGTTTAAATatATACATATCAAACGTTTACACACTCAAGACCAAACATATCAATGCGAGCATTGCCCGAAaaaatataacacaaaaaatgacTACGATCGTCATGTAGCAGTACATACGAATACTAAAAAGTATACGTGTGATGTATGCGACAAATCATATCCGTATCATTCGTCATACTTAATACATCGTCGCAAACATGATCCTGAATATATCGATAAAATCTATCGATGCGAATATTGTACGTACTCAACAACACGTTCAACATATCTACGTTATCATATAACATCACGTCATGAAGGTGTTTGTGAAGTATGCGATATATGTGGTAAACAAGTGACAGCATCATATTTAAAACGACATAAACAGTTACATACCAAAGTGAAGCCATTTAAATGTACAAcatgttttaaaagttttctgAAAAATACGTATCTATTGAATCATTTGAAAACACACAGTGGTGTTAAACAGTATCAATGTAAAGATTGTGGACAATgtttcacacaaaaaattacgTTACTTAAACATGAAGAACGTCATAAGAAACATCCGTCGTACAGCTGTACCACATGTTTAAAAGTGTTcacattaaagaaattattaaaaactcaCATGAAAACACATAAACCGCTTTTATGA
- Protein Sequence
- MIRALKVPRLFYLELKSLINRDKISGNLKEERIFNCTECNYKTKHRTNLTMHVERVHLKIYKYHCKVCRKGFYLNNDYKNHLLIHSDTKYACPTCDKTYLYSHNLQVHIKEKHSNTNNTIEEKKSYPCNNCTKVFTSRQCLRSHNIHNHLSRIVCAVCGKSFTPIYLQEHMRLHLQQKDFQCTICDKKFSISRYLQQHMVTHSNLKPYKCEQCGKMFTQRSSLTVHYRIHTDNKPFKYIHIKRLHTQDQTYQCEHCPKKYNTKNDYDRHVAVHTNTKKYTCDVCDKSYPYHSSYLIHRRKHDPEYIDKIYRCEYCTYSTTRSTYLRYHITSRHEGVCEVCDICGKQVTASYLKRHKQLHTKVKPFKCTTCFKSFLKNTYLLNHLKTHSGVKQYQCKDCGQCFTQKITLLKHEERHKKHPSYSCTTCLKVFTLKKLLKTHMKTHKPLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -