Basic Information

Insect: Nineta flava
Gene Symbol: -
Assembly: GCA_963920215.1
Location: OY986042.1:1322732-1323715[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4.7e-08 1.7e-06 28.7 1.5 2 23 72 93 71 93 0.97

2 9 4.7e-06 0.00018 22.3 3.8 1 23 99 121 99 121 0.98

3 9 2.2e-07 8.1e-06 26.5 0.6 1 23 127 149 127 149 0.97

4 9 3.7e-06 0.00014 22.7 2.5 1 23 157 179 157 179 0.95

5 9 0.00012 0.0045 17.9 1.2 3 23 187 207 186 207 0.98

6 9 1.1e-05 0.0004 21.2 1.1 1 23 213 235 213 235 0.98

7 9 1e-08 3.9e-07 30.7 2.4 1 23 241 263 241 263 0.99

8 9 8.9e-07 3.3e-05 24.6 0.5 1 23 269 291 269 291 0.98

9 9 4.4e-05 0.0016 19.3 0.1 1 21 297 317 297 318 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4.7e-08	1.7e-06	28.7	1.5	2	23	72	93	71	93	0.97
2	9	4.7e-06	0.00018	22.3	3.8	1	23	99	121	99	121	0.98
3	9	2.2e-07	8.1e-06	26.5	0.6	1	23	127	149	127	149	0.97
4	9	3.7e-06	0.00014	22.7	2.5	1	23	157	179	157	179	0.95
5	9	0.00012	0.0045	17.9	1.2	3	23	187	207	186	207	0.98
6	9	1.1e-05	0.0004	21.2	1.1	1	23	213	235	213	235	0.98
7	9	1e-08	3.9e-07	30.7	2.4	1	23	241	263	241	263	0.99
8	9	8.9e-07	3.3e-05	24.6	0.5	1	23	269	291	269	291	0.98
9	9	4.4e-05	0.0016	19.3	0.1	1	21	297	317	297	318	0.94

Sequence Information

Coding Sequence: atGTCTAACAATCCTCCATCAACtggaaatgtaaataatattcaaataataaaagaagaagacatcaaaattgaaccagtgttcattaaaaaagaaaatgatgatgatgaactACCAGAAGATATTCAACCCAGTGATTTTTGTGTTCAAACATTAACCACAACAAACACTTTAAATGACCGGAAACGAATTCAAACTGAGGAAAAAGTTTTAACTTGTGATGATTGTAATAAATCATTTGCCAAGCAAAGCCAATTGCTTAGACACCAACGGACTCATACTGGAGAGAAACCATACTCTTGTGATGAATGTGATAAAGCATTTTCGCAACATAGCCATCTACAGGGTCATAAACGtcttcatactggagaaaaacctttcgCGTGTGATATTTGTTTGAAAGCATTCaccaataaaagtaatttaattaaacacagACGGATTCACACCGGAGAGAAGACATATTCATTcttatgtgatgtttgtaataaaacattttcgcAACAGAGCCATTTAGTTGAGCATAAACGTCTGcataccggagaaaaaccaAATCTATGCGATGTTTGTTACAAAACATTTACGCGAcgtaaggatttagttgaacaTAAACGACTTCATACCGGAGAAAATCtatattcatgtgatgtttgcaGTAAGACATTCATCCGACGTCACGATTTAGTTGAGCAcgaacgaattcatactggagaaaaaccatactCGTGTGATCTGTGTGATAAACGATTTACAAATAAAAGCAATTTAGTGAAACACCAAAGAACGCACACCgaagagaaaccttattcatgtgatgtttgtgataaaacattttcgCAACTTGGCAATTTAGTTAGCCATAAACGATTGCACACCGGCGATAAACCTTTTGCAtgtaatgtttgtgataaaacatttgcgCAGCAAGGTAGTTTAGTTTATCACAAACGAGTTTGTAGCGGTGGCAAATCATCCAAATTGTAG
Protein Sequence: MSNNPPSTGNVNNIQIIKEEDIKIEPVFIKKENDDDELPEDIQPSDFCVQTLTTTNTLNDRKRIQTEEKVLTCDDCNKSFAKQSQLLRHQRTHTGEKPYSCDECDKAFSQHSHLQGHKRLHTGEKPFACDICLKAFTNKSNLIKHRRIHTGEKTYSFLCDVCNKTFSQQSHLVEHKRLHTGEKPNLCDVCYKTFTRRKDLVEHKRLHTGENLYSCDVCSKTFIRRHDLVEHERIHTGEKPYSCDLCDKRFTNKSNLVKHQRTHTEEKPYSCDVCDKTFSQLGNLVSHKRLHTGDKPFACNVCDKTFAQQGSLVYHKRVCSGGKSSKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -