Basic Information

Insect: Nineta flava
Gene Symbol: -
Assembly: GCA_963920215.1
Location: OY986041.1:126645537-126647060[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0012 0.046 14.7 0.4 6 23 2 19 1 19 0.96

2 12 5e-07 1.8e-05 25.4 4.8 1 23 25 47 25 47 0.98

3 12 7.3e-05 0.0027 18.6 5.7 1 23 53 75 53 75 0.99

4 12 0.037 1.4 10.1 0.4 5 23 143 161 141 161 0.96

5 12 1.2e-05 0.00046 21.0 2.7 1 23 221 243 221 243 0.97

6 12 6.1e-07 2.3e-05 25.1 1.7 1 23 249 271 249 271 0.98

7 12 2.4e-05 0.00091 20.1 1.3 1 23 341 363 341 363 0.98

8 12 7e-07 2.6e-05 25.0 0.4 1 23 369 391 369 391 0.95

9 12 8.5e-05 0.0032 18.4 8.0 1 23 397 419 397 419 0.98

10 12 3.2e-05 0.0012 19.7 1.6 1 23 425 447 425 447 0.98

11 12 3.8e-06 0.00014 22.6 0.8 1 23 453 475 453 475 0.98

12 12 5e-05 0.0019 19.1 0.7 1 23 481 504 481 504 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0012	0.046	14.7	0.4	6	23	2	19	1	19	0.96
2	12	5e-07	1.8e-05	25.4	4.8	1	23	25	47	25	47	0.98
3	12	7.3e-05	0.0027	18.6	5.7	1	23	53	75	53	75	0.99
4	12	0.037	1.4	10.1	0.4	5	23	143	161	141	161	0.96
5	12	1.2e-05	0.00046	21.0	2.7	1	23	221	243	221	243	0.97
6	12	6.1e-07	2.3e-05	25.1	1.7	1	23	249	271	249	271	0.98
7	12	2.4e-05	0.00091	20.1	1.3	1	23	341	363	341	363	0.98
8	12	7e-07	2.6e-05	25.0	0.4	1	23	369	391	369	391	0.95
9	12	8.5e-05	0.0032	18.4	8.0	1	23	397	419	397	419	0.98
10	12	3.2e-05	0.0012	19.7	1.6	1	23	425	447	425	447	0.98
11	12	3.8e-06	0.00014	22.6	0.8	1	23	453	475	453	475	0.98
12	12	5e-05	0.0019	19.1	0.7	1	23	481	504	481	504	0.97

Sequence Information

Coding Sequence: atgtgtgataaaacatttcccACACGATGCGATTTAGTTAGGCATGAACGGGTtcataccggagaaaaaccattttcatgcaATGTATGTGATAAAACTTTCAGAAATCGACATAATTTACAATTACACACACGAACCCATTCTGGGCAAAAACCTTTTACATGTAATGTTTGCAATAAAACATTTACCCATCGAGATGTTTTCAAtacacataaacgaactcatacagaGGAAACATCAACTTCATTGGATTTTGATTCATCTTGCATTGAAAATAATACTGTCTTCATCAAAATTGAAGACGTTGAAGCTGAGCAACAATCGTGTACAGAACTTTTATTTCAAGATGGAAATATAAAAGTAGAAGAAAATGCACCGAttgaatataaactaaaaagttgtggagaaaatgattttttatacgatgtttgttttaaaacatcAACTACACAAGAAAATTTAGATAATCATAAACAAACTCATGCGGAAGAAACATCTACTTCATTGGATTTTGATTTATCTGGCATTGAAAATAATACTGTCTTTGTCAAAGTTGAAGAGGTTGAAGCTGAGCAATTCTCATGTATAGATCCTATATTTCTAGACGAAGATGTACAAACAGAACCACAAATACTACAAATACGTACTGGAGAAAAACGTTTTGCATGCGATGTTTGTGAAAAAACCTTTAGACAtcgtaataatttaaatttacacaAACGAATTCATTCTGGggaaaaaccttattcatgtgatgtttgtgataaaaggTTTTCCCAGCGAAGCAGTTTAAATAGACATAACTTAACTCATACGAGAGGAAAACCTCTTTCATTGAACTTAAATTCATCTTACATTGAAAATAATGCTGTCGTCTCAAAAGGTAAAAACGTTGAAGTTGAACAACAGTCGTGTACAGAAATGTTAGTTCAAGACGAAGACGAGGTAATGATTAAAACAGAAATGGAAGAAGAAAATGTATCAGATGATCTAAAACAAAACTGCACTGGAGAAAAGattttttcatgtgatgtttgttttaaaacatcGACTAATCAAAGTAATTtagctcaacataaacgaattcattcgGGAGAAAGACCCTTTTTATGTAATGTGTGTGATAAAACTTTTGTCACACGAAGCGATTTAGCTCGACATGAACGGGTTCATACCGGCGAAAAGCCATTTTCATGtcatatttgtgataaaaaatttttccaacacAATCATCTAATTCAACATATACGGagtcatactggagaaaaaccatatgcatgtgatgtgtgtgataaaacattttcgCTGCATGGTACTTTAGTTAGACACAAACGAAGTCATACTGGTgaaaaaccatattcatgtgacttttgtgataaaacattttctcGGCAAGCCTCTGTAGTTATACATCAACGTAGTCATACTGGAGAAAGACCATTCtcttgtgatatttgtgataaattatttactGCACAGACCAGTTTATCTACACATATGAAacgaattcataaaataaaataa
Protein Sequence: MCDKTFPTRCDLVRHERVHTGEKPFSCNVCDKTFRNRHNLQLHTRTHSGQKPFTCNVCNKTFTHRDVFNTHKRTHTEETSTSLDFDSSCIENNTVFIKIEDVEAEQQSCTELLFQDGNIKVEENAPIEYKLKSCGENDFLYDVCFKTSTTQENLDNHKQTHAEETSTSLDFDLSGIENNTVFVKVEEVEAEQFSCIDPIFLDEDVQTEPQILQIRTGEKRFACDVCEKTFRHRNNLNLHKRIHSGEKPYSCDVCDKRFSQRSSLNRHNLTHTRGKPLSLNLNSSYIENNAVVSKGKNVEVEQQSCTEMLVQDEDEVMIKTEMEEENVSDDLKQNCTGEKIFSCDVCFKTSTNQSNLAQHKRIHSGERPFLCNVCDKTFVTRSDLARHERVHTGEKPFSCHICDKKFFQHNHLIQHIRSHTGEKPYACDVCDKTFSLHGTLVRHKRSHTGEKPYSCDFCDKTFSRQASVVIHQRSHTGERPFSCDICDKLFTAQTSLSTHMKRIHKIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -