Nfla013897.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nineta flava
Gene Symbol
-
Assembly
GCA_963920215.1
Location
OY986043.1:2256522-2258490[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 2.3e-06 8.7e-05 23.3 3.2 1 23 166 188 166 188 0.97
2 12 1.1e-05 0.00042 21.1 1.9 1 23 194 216 194 216 0.98
3 12 4.5e-06 0.00017 22.4 2.4 1 23 222 244 222 244 0.97
4 12 9.6e-06 0.00036 21.4 4.0 1 23 250 272 250 272 0.98
5 12 9.3e-06 0.00034 21.4 4.3 1 23 278 300 278 300 0.99
6 12 1.5e-05 0.00056 20.8 1.7 1 23 306 329 306 329 0.98
7 12 0.00018 0.0068 17.3 3.4 1 23 344 367 344 367 0.92
8 12 1.2e-05 0.00045 21.1 0.6 1 23 374 396 374 396 0.94
9 12 0.00023 0.0085 17.0 3.4 1 23 402 424 402 424 0.92
10 12 3.5e-07 1.3e-05 25.9 5.8 1 23 430 452 430 452 0.99
11 12 6.7e-07 2.5e-05 25.0 0.3 1 23 458 480 458 480 0.99
12 12 0.0027 0.1 13.7 4.5 1 23 486 508 486 508 0.96

Sequence Information

Coding Sequence
atgaatgattttacaaaaatatgtcgAACATGTTCATTGCAAGGTGAATTAATATCACTTTTCGTCGAACAACCATTTCGAATTGCTGATATGTTAACTGATATTGTTAACACTAAggtaataaaaaatgataaatacccacaaaatatttgtaaagatTGTTTCGATACATTAAAATCCGCttacgaatttaaaaaacgctGTAAATCAGTGCAAACGCGATTCGATGAATACATCCAAAATGATTACAAACATGACGATGGCATTTTTATCGTCTCaattaaagaagaaattaaTTTCGATGATGATGACAACGACAATACAGATGATAAATTCGATGACGATAACGATGATTCGAAAATGGAAGGACCGTTGGATGATGTTCAACATTttgttgaacaaaatttaaaagaaggTGACGAACTATTGgaaattaaaccaaaaatagaGGATGGAAATACGGTACCAGAGACGAAAAAAACATCGAAATTAGATCACATTTGTAAATACTGTCCGAAAATATTTAGTTCGAAAACAATGTTAATCCGACATACTCGAACGCACACCGGAGAACGTCCGTATAcgtgtaaaatttgtaataagtcCTTCACAGTGTTGGGATCTTTAACCACACATCATTTAATACACACCGGTGAAAAACCGCATACATGTACAGTGTGTAACAAGAGTTTTGCACGAAAAAATTCATTAACCAAACATGCCATGATTCACACCGataaaaaaccatttaaatgtaaaatttgtgaACAATCATTTCGACAACGAAATCATCTACAAGCACATCTCACACGTCATACCGGCGAGCGACCATATCAATGTACAGTGTGTAACAAACAATTTTCGTTAAATCAAACGTTAAAACATCATATACGAACGCATACCGGAGAATTACCGTATCAATGTAAATATTGTGGCAACATGTACAATCAATCAAATTCGCTACGGAACCATATAAAGGTGAAACATTTAAACATGAAACCGACAACGGTGAAGAAGCTGAATGTAACATTTACATGTCGGACATGCACGAAAACATTTACGAGTAAATCCGaatacaataaacataaattGGATGAACATCCCGAACAAactcaaatttatttatgtaattactGTGGCAAAGAGTTTACCAATTCGTTACAGCTGAAATCACATTTGCTCGCACATTCCACAGATCGGAAGCATAAGTGTACGATGTGTGACAAACGGTTTGTGAGGAAACAATCGTTAAAGATGCATGAAGCGTTTCATACGGGCGAACGGCGGTATCAGTGTAAGATGTGCGAGCAACGTTTTAAACAATCCAGTCATTTGCGTACACATATGCGGACGCATACCGCGGAAAAACCATACAAATGCCAGTATTGTGATAAATCTTTTGCGGGTAAAGGTAATTTAATTGTACATGAGCGTATACATACGGGGGAAACACCCTATTTGTGTTCGATCTGTAATAAAGGATTTTATCATTTGACGACAATGAAAAAACATAAGCAAACgcatttgttaaaataa
Protein Sequence
MNDFTKICRTCSLQGELISLFVEQPFRIADMLTDIVNTKVIKNDKYPQNICKDCFDTLKSAYEFKKRCKSVQTRFDEYIQNDYKHDDGIFIVSIKEEINFDDDDNDNTDDKFDDDNDDSKMEGPLDDVQHFVEQNLKEGDELLEIKPKIEDGNTVPETKKTSKLDHICKYCPKIFSSKTMLIRHTRTHTGERPYTCKICNKSFTVLGSLTTHHLIHTGEKPHTCTVCNKSFARKNSLTKHAMIHTDKKPFKCKICEQSFRQRNHLQAHLTRHTGERPYQCTVCNKQFSLNQTLKHHIRTHTGELPYQCKYCGNMYNQSNSLRNHIKVKHLNMKPTTVKKLNVTFTCRTCTKTFTSKSEYNKHKLDEHPEQTQIYLCNYCGKEFTNSLQLKSHLLAHSTDRKHKCTMCDKRFVRKQSLKMHEAFHTGERRYQCKMCEQRFKQSSHLRTHMRTHTAEKPYKCQYCDKSFAGKGNLIVHERIHTGETPYLCSICNKGFYHLTTMKKHKQTHLLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-