Nfla019522.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986044.1:59145976-59153239[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00072 0.027 15.5 0.3 3 23 169 189 167 189 0.95 2 15 0.45 17 6.7 0.8 1 23 194 219 194 219 0.95 3 15 0.00082 0.031 15.3 1.9 2 23 226 248 225 248 0.93 4 15 0.00047 0.017 16.1 0.3 3 23 255 275 253 275 0.97 5 15 0.0012 0.046 14.7 4.8 1 23 279 301 279 301 0.98 6 15 6.1e-05 0.0023 18.8 1.0 1 23 307 329 307 330 0.96 7 15 1e-05 0.00038 21.3 8.2 3 23 344 364 342 364 0.96 8 15 9.1e-05 0.0034 18.3 0.9 1 23 370 392 370 392 0.98 9 15 5.6e-06 0.00021 22.1 1.7 1 23 398 420 398 420 0.98 10 15 4.1e-06 0.00015 22.5 1.2 1 23 426 448 426 448 0.98 11 15 1.4e-06 5.1e-05 24.0 1.8 3 23 471 491 469 491 0.96 12 15 5.8e-05 0.0021 18.9 3.9 1 23 497 519 497 519 0.98 13 15 2.8e-05 0.001 19.9 1.8 1 23 525 547 525 547 0.98 14 15 1.8e-05 0.00067 20.5 1.7 1 23 553 575 553 575 0.96 15 15 0.00048 0.018 16.0 4.8 1 23 581 603 581 603 0.98
Sequence Information
- Coding Sequence
- ATGATTGTATATTGTGCTTCCGTAAATATATCAAAAGATGATGGATTACCGGATATTGTATGCGATTCATGTAAATTACGTTTAGAAACAGCATACTTATTTAAACGGGACTGCGAACAATCTGATGCAAAATTAcgaatgaaaaaagaaatagactatAACTTTAAACAAGAAAACAATAATGATTCAGAAAGTTGTATTGAAACAATTGATACGGAAAATATCAAATTGGAGAATGATACTAAATCACAAAACTATAATGAAGAGTCGTTGGATACTGTGTATCCAAATATGTTTGCGAAGGCAGAAATTAACGATTTGAAGATTCCTACAGATTCCAATGATATAAATACATTAGAAAATGTATTCGAAGACAATTCAGATAACTATGTTACTGACAAAGAAGATGGCAATGAAAACGATACAGATTATCGACCaccaaaaaaatcaaatcgtaaacgtaaaaaaaaatctataaatgaTACTAAATTacgtaaaataatttgttatgtaTGTGTTAAAACGTTTTCGTCTCAAACTGATTATAATACACATATTCTACAGCATCCAAATCAAAAATATACATGTGATCTAGAAAATTGTAATATggaatttacaaattatttaaaatatgcattacaTCGAAAAAATGATCATTTAATTGAAAGTTACTTAACGTGTAAAGATTGTCAACGAAATTTTAGTAATAAACGTAGTTTTGATAGACATGTACTTAATTTACATGGAGATCGTCCCTATGGATGTTTGaaatgttcaaaaatgtttCGTGAAGAGAGTGCCTTAGAAACTCATATAAAGATACATTCTAAAGAACATAAATGTGAATTTTGTGAAAAGgttttttCAACTTCATTTCGTCTGTCAACTCATAGACGCTTACATACCCAAGAAAAACCATATGTATGCCAAGATTGTGGTAAAAAATGGATTGATAAATCGAGCTTAACCAAACATATTGATTCTCATCACAATGGTAAACCAAAGATGATACGTGAAAAAAGTCACTTATGTTCGTATTGTGGACGAACATTTAATCGACTACACCATTTAACAAAACATATTCGAACACATACCGGATCAAAACCATTTAGTTGTGACCAGTGTGACTACCGTAGTGCCGATAAACAGTTGTTACGCTCACATATACGTACTCATACCGGTGACCGACCTTACAAATGTAGTTATTGTGAGAAATCATTCAGTACTCGAGGCTATTTGATTATACATGAACGATTTCATTCCGGACATAGACCGTACATTTGTGATACTTGTAAAAAAGGATTTACAAATAGTAAAGATTTAAAAGTACATGAGAGAACTCACACGGGTATCAAATTATTTACgtgtaatatttgtaAACCGAAGAGAAAAcgtgaaaaaaatcatttatgttCATATTGTGGACAAACATACAATCGACCtgatttattaacaaaacatattCGAACACATACCGGTTCAAAACCATTCAGTTGTGATCATTGTGACTATCGAAGTCGTGACAAACAATCGTTACGATCACATATACGTACTCATACCGGTGACCGACCGTACAAATGTAGTTATTGTGAGAAATCATTTGGGACCCGAGGTTATTTAACTATACATGAACGTTTTCATTCTGGACATAGACCGTACCTATGCAGTACTTGTAAAAAAGGGTTTACAAATAGTAAAGATTTAAAAGTACACGAAAGAACTCACACGGGTATCAAATTATTTACGTGTAATATTTGTACTAATAGTTTTACAACATTACACTATCTTCGTGTGCATACCAAAAAACACGATACATAA
- Protein Sequence
- MIVYCASVNISKDDGLPDIVCDSCKLRLETAYLFKRDCEQSDAKLRMKKEIDYNFKQENNNDSESCIETIDTENIKLENDTKSQNYNEESLDTVYPNMFAKAEINDLKIPTDSNDINTLENVFEDNSDNYVTDKEDGNENDTDYRPPKKSNRKRKKKSINDTKLRKIICYVCVKTFSSQTDYNTHILQHPNQKYTCDLENCNMEFTNYLKYALHRKNDHLIESYLTCKDCQRNFSNKRSFDRHVLNLHGDRPYGCLKCSKMFREESALETHIKIHSKEHKCEFCEKVFSTSFRLSTHRRLHTQEKPYVCQDCGKKWIDKSSLTKHIDSHHNGKPKMIREKSHLCSYCGRTFNRLHHLTKHIRTHTGSKPFSCDQCDYRSADKQLLRSHIRTHTGDRPYKCSYCEKSFSTRGYLIIHERFHSGHRPYICDTCKKGFTNSKDLKVHERTHTGIKLFTCNICKPKRKREKNHLCSYCGQTYNRPDLLTKHIRTHTGSKPFSCDHCDYRSRDKQSLRSHIRTHTGDRPYKCSYCEKSFGTRGYLTIHERFHSGHRPYLCSTCKKGFTNSKDLKVHERTHTGIKLFTCNICTNSFTTLHYLRVHTKKHDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -