Nfla013724.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986042.1:118072979-118079405[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00011 0.0041 18.0 0.7 1 23 163 185 163 185 0.96 2 18 8.2e-06 0.0003 21.6 1.0 2 23 194 215 194 215 0.98 3 18 0.0015 0.058 14.4 0.8 1 23 221 244 221 244 0.97 4 18 0.00066 0.025 15.6 0.4 2 23 250 271 249 271 0.97 5 18 0.025 0.91 10.7 2.7 1 23 277 299 277 299 0.98 6 18 0.0022 0.083 13.9 6.3 1 23 307 329 307 330 0.96 7 18 0.021 0.79 10.9 2.2 1 23 363 386 363 386 0.94 8 18 0.0039 0.15 13.2 4.8 3 23 397 417 396 417 0.98 9 18 6.3e-06 0.00024 21.9 0.5 1 23 423 445 423 445 0.98 10 18 4.4e-07 1.6e-05 25.6 0.7 1 23 451 473 451 473 0.98 11 18 5.5e-06 0.0002 22.1 1.1 1 23 479 501 479 501 0.99 12 18 1.2e-05 0.00044 21.1 1.2 1 23 557 579 557 579 0.98 13 18 0.0012 0.046 14.7 5.9 1 23 585 608 585 608 0.97 14 18 0.57 21 6.4 2.1 1 23 640 663 640 663 0.96 15 18 0.69 26 6.1 1.9 3 23 674 694 673 694 0.97 16 18 0.00016 0.0059 17.5 1.5 1 23 700 722 700 722 0.98 17 18 8.6e-07 3.2e-05 24.7 1.6 1 23 728 750 728 750 0.98 18 18 5.4e-06 0.0002 22.1 1.7 1 23 756 778 756 778 0.99
Sequence Information
- Coding Sequence
- ATGACAACAGAGCTCACAATTTCAGACTTTGGAAAAATCTGTAGAATTTGTTTAAaggaaaattccaatttaacatccattttaaatacaaatgtcTTAACTTCATTGACCCAATTGACTAACATTGAAgtCAACGATAGATTACCACAAGGAATTTGTACGCATTGTGTGGATGAAACGCATCGATGTACTAAATTTAAACAACTTTGTGAAAGCTCTGAACAATGTTTACgtcaaatattaaatgaaaatgttgataataaaaattggtTTGAAACGTcatcaattaaaattgaaaatgttaaaattgaaCTTTCCAATGGTAAAGATGGTAATGATTTCGATGAAAATTTCTTCTCAGACAATGTTAGTGAAAATGATGGTGAAACACCATCGATTGATCAAGTAGATAAATCGATATCAGCGCGGCAAGCACGAATTACATGGGTCTTGAGTTTAGGATCAGAAAAATGTGATACcagtaaatttttatgtaaattatgtgaTAAAACTTTagttaatttaaattcattgGCGCGACACATGAAAATGCACGatgaaaatcgaaaatttgttgcggaatgtgaaatttgtaaaaaaggaTTCTATGAAAATAGCAACTATTTAAAACATATGCGAACGCACAATAGAAATACAAAATACAACTGTACAGAATGTGCAAAAGaattttttgagttaaatctATTAACACGTCACTTACGTAAAGTACATAGAACAAAACCAATAGAATGTACAGAGTGTAACAAGAAATTTACATTACAAGAACAATAcgatttacatattaaaatacataaaaaagattacgaatatttttgtaaatattgtaataaaggTTATTTCTTGGAGCGTAAATTAAATGAACATCTAAAATCGCACGCGTCCGACCAATATCGTAATTACACGTGCGAGTATTGTTTAAAGACGTACCAACACAATCAGAGTTTAAAGAAACATATCGAACGGCACCATACAAATGTAcagcaaaaatttaattgtcaTTTGTGTGGTAGcactgtatttaatttaaaggaACATTACCTATGTAAACACAGTACAAATAAACCATTTAAATGTACAGAGTGTCCACGTAGTTTTGCAACAGAATTGCTATTACGATGTCATACAAAGATCACACATGAAAAATTGTACAATTCAAAGAAAGCTCTGTGCAATATTTGTGGAATGCAAACATTTAGTAAATGTCATTTACAAATTCATATGCGTACCCACGGCGAGGACAAACCATTTCAATGTGCGCAATGCGACAAATCATTTAAAACACCGGTCGGTCTGCGAGCGcacaaaacaacacacaaagATGATCGACCGTATCAGTGCGATCAGTGCGACAAAGCTTTTAAACAGAGCAAAGCGTTAAAACGTCATTTAATCATTCATACCGGTGAACGACCGTACAAGTGTAACGTGTGCGACAAGCGGTTTAATGACAAGTCGATATTGAATCGTCATTTGAATGTACATTCAATCCATGCACCAAGTACTGTTGGCGAAGATGAGGACGATGATGATAATGGTTGGTTTGATCATGAATTATCATCATCAGAGCTACAGAACGTACAACACGAATCCGAACATATCGAAAAGAATGTTTCATCAAAACATCATAAGTTTTCAAAACAACAAACATTTCAATGTACCGTGTGTAACAAGGTATATAATCAGGCGTACAAATTACGTAAACATGCTAAAATACATTCAACATGCAAACCGTACCATTGTACAGAATGTAACaaagattttaaatatttagatagCTATCGAAATCATCGACGTCGTCGCCATTTAAATCAATCCAAATCGAAATGTCGTATTTGTGATAAAGAAGTTTTACATTTAAAGGCACATAATTTACGTAAACATACAACAGATAAACCATTTAAATGTACAGAGTGTTCAACAAACTATGCTACGGAATTATTACTACGATGTCACATTAAAATAACACACGAGAAATTGTACGCAACCAAGAAAGCTTTATGTAACATTTGTGGCTTCAAATGTTTGAACAACAATGCATTGGACAAGCATTTGCAAAGTCACAGCGACCGGAAGCCATTCAAATGTTTACAATGTACGAAAACATTTAAACTGCGTAGTGGTTTAATGGAGCATCAAGCGACACACAAAGATGAACGACCATATCAGTGCCAGCAATGTGACAAAGCTTTCAAGCAGAGCAAAACTTTAAAACGACACTTAATCATTCATACCGGTGAACGGCCGTACAAGTGTAACGTGTGCGATAAACGTTTTAATCAGAATTCTATTTTACGGACACACATGAAAGTCCATTCAGCTCATTCTAGATCGTAA
- Protein Sequence
- MTTELTISDFGKICRICLKENSNLTSILNTNVLTSLTQLTNIEVNDRLPQGICTHCVDETHRCTKFKQLCESSEQCLRQILNENVDNKNWFETSSIKIENVKIELSNGKDGNDFDENFFSDNVSENDGETPSIDQVDKSISARQARITWVLSLGSEKCDTSKFLCKLCDKTLVNLNSLARHMKMHDENRKFVAECEICKKGFYENSNYLKHMRTHNRNTKYNCTECAKEFFELNLLTRHLRKVHRTKPIECTECNKKFTLQEQYDLHIKIHKKDYEYFCKYCNKGYFLERKLNEHLKSHASDQYRNYTCEYCLKTYQHNQSLKKHIERHHTNVQQKFNCHLCGSTVFNLKEHYLCKHSTNKPFKCTECPRSFATELLLRCHTKITHEKLYNSKKALCNICGMQTFSKCHLQIHMRTHGEDKPFQCAQCDKSFKTPVGLRAHKTTHKDDRPYQCDQCDKAFKQSKALKRHLIIHTGERPYKCNVCDKRFNDKSILNRHLNVHSIHAPSTVGEDEDDDDNGWFDHELSSSELQNVQHESEHIEKNVSSKHHKFSKQQTFQCTVCNKVYNQAYKLRKHAKIHSTCKPYHCTECNKDFKYLDSYRNHRRRRHLNQSKSKCRICDKEVLHLKAHNLRKHTTDKPFKCTECSTNYATELLLRCHIKITHEKLYATKKALCNICGFKCLNNNALDKHLQSHSDRKPFKCLQCTKTFKLRSGLMEHQATHKDERPYQCQQCDKAFKQSKTLKRHLIIHTGERPYKCNVCDKRFNQNSILRTHMKVHSAHSRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -