Basic Information

Insect: Nineta flava
Gene Symbol: -
Assembly: GCA_963920215.1
Location: OY986044.1:34738249-34739949[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.016 0.58 11.3 1.8 1 23 205 227 205 227 0.97

2 13 2.8e-06 0.00011 23.0 1.2 1 23 233 255 233 255 0.99

3 13 6.3e-06 0.00023 22.0 1.5 1 23 261 283 261 283 0.98

4 13 5.1e-07 1.9e-05 25.4 0.8 1 23 289 311 289 311 0.98

5 13 0.00042 0.016 16.2 6.7 1 23 317 339 317 339 0.99

6 13 2.2e-05 0.00081 20.2 2.9 1 23 345 367 345 367 0.98

7 13 6.5e-05 0.0024 18.8 1.3 1 23 373 395 373 395 0.95

8 13 0.00021 0.0078 17.2 1.7 2 23 404 425 403 425 0.98

9 13 1.2e-06 4.6e-05 24.2 2.3 1 23 431 453 431 453 0.99

10 13 5e-05 0.0019 19.1 0.8 1 23 459 481 459 481 0.98

11 13 4.1e-06 0.00015 22.5 1.1 1 23 487 509 487 509 0.98

12 13 0.00078 0.029 15.4 2.0 1 23 515 537 515 537 0.99

13 13 4.1e-06 0.00015 22.5 2.7 1 23 543 565 543 565 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.016	0.58	11.3	1.8	1	23	205	227	205	227	0.97
2	13	2.8e-06	0.00011	23.0	1.2	1	23	233	255	233	255	0.99
3	13	6.3e-06	0.00023	22.0	1.5	1	23	261	283	261	283	0.98
4	13	5.1e-07	1.9e-05	25.4	0.8	1	23	289	311	289	311	0.98
5	13	0.00042	0.016	16.2	6.7	1	23	317	339	317	339	0.99
6	13	2.2e-05	0.00081	20.2	2.9	1	23	345	367	345	367	0.98
7	13	6.5e-05	0.0024	18.8	1.3	1	23	373	395	373	395	0.95
8	13	0.00021	0.0078	17.2	1.7	2	23	404	425	403	425	0.98
9	13	1.2e-06	4.6e-05	24.2	2.3	1	23	431	453	431	453	0.99
10	13	5e-05	0.0019	19.1	0.8	1	23	459	481	459	481	0.98
11	13	4.1e-06	0.00015	22.5	1.1	1	23	487	509	487	509	0.98
12	13	0.00078	0.029	15.4	2.0	1	23	515	537	515	537	0.99
13	13	4.1e-06	0.00015	22.5	2.7	1	23	543	565	543	565	0.98

Sequence Information

Coding Sequence: ATGCCCTCCGAAGTGAATAAAAGTGATAATAACTCTGATAGCTTTGTGAATATGACAACTTATACACCGAACGCGTATTCGAATCTCACAACGATGACGCCTAAACGGAATATCACTGTCGAACGACATAAATTTCTCACACGACGCCAAAATGCCGATGAAACAATTCAACAATACATCAACGATCTAGTGAATTTAAGTATGACCTGCGATTTTGGTGATTTACGAACGAGTTTAGTTAAAGATCAATTGATATGTGGCTTAGCAAAATGTTACGATCGTATTCGAGAAGAATTACTACGTGTCGAAGATCTAGATTTGAGTAAAGCTATGAATATCTGCTCAACAATGGAGTTGTTAATTGATAAGGATAGTTGTGAGATTAAAGATGGAACGATAAATTGTGAGATCAAGGAAGAAATTACGGATAAATTAGAATGTCGGATCAAGGAAGAAAATGATGATGAAGACGATGATGATAAAGATGGTATTGATCATGATAACGATTCAGATGGTAATTTAGATTTTGATGTGTTAAATTCGATAAAAGATGAATGTGATAAACCGGAAAAAATTCGCCGTAAACGACGGGTTAATAAAAAAGATCGACCCTTTAAGTGTATCGTATGTCATAAAACATTTCCACTACGTAAACTATTACTAAGTCATGAACGAATCCATGCAGCGGAACGACCCTACAAATGTCCTCACTGTCCGAAGGCGTACACATCAAATCTAGATTTAACGACACATCTCAAAGTGCATTCCGGTGATCGACCATTTAAGTGTAATttatgtgataaaacatttgtgtacaaacaaaatttaagtttGCATGAGCGTATCCATACGGGGGAGAAACCATTCAAATGTAGTatatgtgataaaacatttgcaCAAAAATCAAATGTCCGGGAGCATGAACGTATCCATACGGGGGTCAAACCATACCAGTGTCATATTTGTAAACAACAGTTCACGAACAAATTCCATGCGAAAAATCATTTAAggattcatactggagaaaaaccgttTAAATGTACAGAGTGTTCAAAAGCGTTCACATTCCGATCGACTTTACGCGAGCATAAAAAAATCCATACGGGCGAACGACCGTATCAGTGTAACATATGCGGAAAAACATTTTCACAGCGGGGTAACGAacgtgaacataaaaaattacatacagGCGAAAAAAAACCCACTGTACAGTGTAACATCTGTGGGAAAATTTGCTCCAGTACATATCGTTTAAAAATCCATACGCGTATCCATACGGGCGAACGGCCCTATAAGTGTAATTCATGTGATAAAACATTCGTCTCCCCCGAATATTTAAAAACCCATAAACGTACGCATAAAACGGAGCGTCCATTTATGTGTAAAATTTGTGGTCGGACATTTGCAATGAAGAAATATTTGATTGGACATGAGAAAACGCATACGCGAGAAGAGACATTTAAATGTGATTTAtgtgaaaaagaattttcaCAACGGAGTACACTGAAAATGCATGCGCGTGTTCATACCGGGGAAAAACCGTATAAATGTAGTATTTGTGAGAAAACATTTATGTATCGTAAATATATTAAGGATCATGAGCGTATACATACGGGGGAGAAAccatataaatgtaatatttgtgaAAAAGCATTTGCACAACATTCGACGTTAAAACGGCATTCGAAAATACATTCATGA
Protein Sequence: MPSEVNKSDNNSDSFVNMTTYTPNAYSNLTTMTPKRNITVERHKFLTRRQNADETIQQYINDLVNLSMTCDFGDLRTSLVKDQLICGLAKCYDRIREELLRVEDLDLSKAMNICSTMELLIDKDSCEIKDGTINCEIKEEITDKLECRIKEENDDEDDDDKDGIDHDNDSDGNLDFDVLNSIKDECDKPEKIRRKRRVNKKDRPFKCIVCHKTFPLRKLLLSHERIHAAERPYKCPHCPKAYTSNLDLTTHLKVHSGDRPFKCNLCDKTFVYKQNLSLHERIHTGEKPFKCSICDKTFAQKSNVREHERIHTGVKPYQCHICKQQFTNKFHAKNHLRIHTGEKPFKCTECSKAFTFRSTLREHKKIHTGERPYQCNICGKTFSQRGNEREHKKLHTGEKKPTVQCNICGKICSSTYRLKIHTRIHTGERPYKCNSCDKTFVSPEYLKTHKRTHKTERPFMCKICGRTFAMKKYLIGHEKTHTREETFKCDLCEKEFSQRSTLKMHARVHTGEKPYKCSICEKTFMYRKYIKDHERIHTGEKPYKCNICEKAFAQHSTLKRHSKIHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00332862;
90% Identity: -
80% Identity: -