Nfla020183.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nineta flava
Gene Symbol
-
Assembly
GCA_963920215.1
Location
OY986044.1:79314119-79321167[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.025 0.93 10.6 0.0 1 23 132 154 132 154 0.96
2 14 0.00015 0.0057 17.6 4.8 1 23 160 182 160 182 0.95
3 14 9.7e-08 3.6e-06 27.7 3.1 1 23 188 210 188 210 0.98
4 14 1.7e-06 6.5e-05 23.7 1.2 1 23 240 262 240 262 0.99
5 14 2.9e-06 0.00011 23.0 4.2 1 23 268 290 268 290 0.99
6 14 7e-06 0.00026 21.8 0.7 1 23 296 318 296 318 0.99
7 14 1.2e-06 4.6e-05 24.2 2.0 1 23 324 346 324 346 0.99
8 14 3.4e-05 0.0013 19.6 0.1 1 23 352 374 352 374 0.99
9 14 0.00017 0.0064 17.4 5.1 1 23 380 402 380 402 0.98
10 14 0.00013 0.0047 17.9 0.1 3 23 420 440 418 440 0.97
11 14 0.0033 0.12 13.4 0.3 1 23 446 468 446 468 0.98
12 14 0.00035 0.013 16.5 2.2 1 23 474 496 474 496 0.98
13 14 0.0012 0.045 14.8 2.0 1 23 502 524 502 524 0.98
14 14 3.5e-05 0.0013 19.6 1.3 1 23 530 553 530 553 0.97

Sequence Information

Coding Sequence
atGAATCTTTGTAATGTATATTCTATGTGCCGAATATGTCTTACATCAACTTCAAATGTTAAAGACGATACGATTCTCATCGATATATTTTCGTTAACACCAAATATCGATATATCTCGTTCAATTGCTTCTGTTATAATGGACTGTGCTCCGGTACAgataaatccCAACGATGGTCTACCAGAATTAATTTGTGACCAAtgtgtaaaaaatttactatcggCATATCAATTTCGAGATATATGCATCCAATCAGACTTATCGCTTCGTCAACAATTCGATATTCcttcaataacaataattaatacaaCTCCCgaggaaataaaattaataaaagtcggAGATATCATTGAAACTATACCTcaaaacaattttgtaaatgaaGACAAGTCTTTTGTTTGTGCAAGTTGTAATGTAGGTTTTCCAACTCGACGTGCTTTAAAAGATCATGAAATTATTCATCCAGGATTACGACCATATGAATGTGATAAATGCTTTAagaaattcaaacaaaaaagtcACTTAAAGTATCATGCAGGCATGCACTCAGGTGAACGACCATTTATGTGTCatatttgtgataaatcatTCACACGTAATAGCTatctaaaaattcatataaattccCATACAACTACCGAAAAAGATGTTACTACAAACATTGAAGAAGATCTGTTTAATGACAGCTTGGCGAATTTGTTAGATGATACGCTACGATATCAATGCGATATATGTGGAAAAGGATATAGACATGCAAATCAATTACGTGTTCACAAAAGGATTCATACCGGTGAACGACCTTTTCAATGTAATATTTGTTCCAAAACATTTATGCATAATAGTGTTTTAAAAACACATATGCGAACACATTCTGGTAAACGTCCTTACGTCTGCGAAATATGTTCGAAAGCGTATTATACGTCGTGGGATTTAAAAAAGCATACTAATACGCACACAGACACGTGTAGATAtcaatgtgatatttgtgagaAAAGATTTAAACAACGTGGTTATTTAAttacacataaacgaactcatacgggagaaaaaccatatGTTTGTGATGTGTGCGGACGTGGTTTTACACAAGTGGGACCTTTAACGGTACATAAGCGAACACATACaggtgaaaaaccattttcttgtaccatttgtgataaaacttgCAATACGGACTGTGATCTGAAGAAACATATGATGGTACATTCAAATGAATTCCCATATACCTGCGATATATTACTCACAAGACGTATAATTTGTGAAATATGTGGAAAAGTATCTGAGCATGGTGCAAACTTTGAAATACATATGCGAACCCATACTGGAGATAAACCATTTCCATGTTTTTTATGTGGTGTTTCTAAAACAAATGAAGGTGATTTAAAGAGTCATATGAAAACGCATTCAGATGAATGTAAATATAGTTGCCACATTTGTGGGAGACAATTTAAGTGGTTAAGTAATCAATTACGACATATGCGATGGCATAAAGGTGAAAGAACCCATAAATGTAGTATTTGtaagaaattgttttttgaagcCGGTGATGTTAAAAAACATATGCTAACTCACACAGGTGAAAAACCCTATAATTGTCGAATATGTGATCGAGCCTTTAtacgtaaaaatttattacgaaCACATTACAAAGTTACACACAACATAACTATGCCTTCTgattcttaa
Protein Sequence
MNLCNVYSMCRICLTSTSNVKDDTILIDIFSLTPNIDISRSIASVIMDCAPVQINPNDGLPELICDQCVKNLLSAYQFRDICIQSDLSLRQQFDIPSITIINTTPEEIKLIKVGDIIETIPQNNFVNEDKSFVCASCNVGFPTRRALKDHEIIHPGLRPYECDKCFKKFKQKSHLKYHAGMHSGERPFMCHICDKSFTRNSYLKIHINSHTTTEKDVTTNIEEDLFNDSLANLLDDTLRYQCDICGKGYRHANQLRVHKRIHTGERPFQCNICSKTFMHNSVLKTHMRTHSGKRPYVCEICSKAYYTSWDLKKHTNTHTDTCRYQCDICEKRFKQRGYLITHKRTHTGEKPYVCDVCGRGFTQVGPLTVHKRTHTGEKPFSCTICDKTCNTDCDLKKHMMVHSNEFPYTCDILLTRRIICEICGKVSEHGANFEIHMRTHTGDKPFPCFLCGVSKTNEGDLKSHMKTHSDECKYSCHICGRQFKWLSNQLRHMRWHKGERTHKCSICKKLFFEAGDVKKHMLTHTGEKPYNCRICDRAFIRKNLLRTHYKVTHNITMPSDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-