Basic Information

Insect: Nineta flava
Gene Symbol: -
Assembly: GCA_963920215.1
Location: OY986040.1:134240368-134247384[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.017 0.62 11.2 2.2 2 23 39 61 38 61 0.96

2 16 1e-05 0.00037 21.3 7.2 1 23 99 121 99 121 0.97

3 16 8.4e-06 0.00031 21.6 1.1 2 23 128 149 127 149 0.97

4 16 0.0013 0.05 14.6 0.4 1 23 158 180 158 180 0.98

5 16 0.0001 0.0037 18.2 0.7 1 23 186 208 186 208 0.98

6 16 3.8e-05 0.0014 19.5 3.1 1 23 214 236 214 236 0.97

7 16 0.00028 0.01 16.8 2.4 1 23 242 264 242 264 0.97

8 16 0.056 2.1 9.5 1.4 2 23 289 311 288 311 0.96

9 16 9.1e-06 0.00034 21.4 9.7 1 23 349 371 349 371 0.97

10 16 1.1e-05 0.0004 21.2 1.8 2 23 378 399 377 399 0.97

11 16 0.0022 0.083 13.9 0.7 1 23 408 430 408 430 0.99

12 16 0.001 0.037 15.0 0.6 1 23 436 458 436 458 0.98

13 16 9.4e-06 0.00035 21.4 3.0 1 23 464 486 464 486 0.97

14 16 9.2e-05 0.0034 18.3 1.4 1 23 492 514 492 514 0.97

15 16 0.00022 0.008 17.1 6.0 1 23 520 542 520 542 0.98

16 16 2.4e-05 0.00089 20.1 6.1 1 23 548 571 548 571 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.017	0.62	11.2	2.2	2	23	39	61	38	61	0.96
2	16	1e-05	0.00037	21.3	7.2	1	23	99	121	99	121	0.97
3	16	8.4e-06	0.00031	21.6	1.1	2	23	128	149	127	149	0.97
4	16	0.0013	0.05	14.6	0.4	1	23	158	180	158	180	0.98
5	16	0.0001	0.0037	18.2	0.7	1	23	186	208	186	208	0.98
6	16	3.8e-05	0.0014	19.5	3.1	1	23	214	236	214	236	0.97
7	16	0.00028	0.01	16.8	2.4	1	23	242	264	242	264	0.97
8	16	0.056	2.1	9.5	1.4	2	23	289	311	288	311	0.96
9	16	9.1e-06	0.00034	21.4	9.7	1	23	349	371	349	371	0.97
10	16	1.1e-05	0.0004	21.2	1.8	2	23	378	399	377	399	0.97
11	16	0.0022	0.083	13.9	0.7	1	23	408	430	408	430	0.99
12	16	0.001	0.037	15.0	0.6	1	23	436	458	436	458	0.98
13	16	9.4e-06	0.00035	21.4	3.0	1	23	464	486	464	486	0.97
14	16	9.2e-05	0.0034	18.3	1.4	1	23	492	514	492	514	0.97
15	16	0.00022	0.008	17.1	6.0	1	23	520	542	520	542	0.98
16	16	2.4e-05	0.00089	20.1	6.1	1	23	548	571	548	571	0.97

Sequence Information

Coding Sequence: ATGCCAATATATCTGAAATATGATACTGTAGTAGGTATCAATACTATGTGGCTATGCAATTTTTTAGAAGAAACATcgataaaaaaagaagaaaatcgaACAGAGTGCACCAAACAATGTCCAAAATGTGATGTATGTTGTGAGTCAACAACTGATTTAGAGGAACATATTGAATCTTACCACGATGATTGTATGTTTCCCGAATCAGAAGCGTTTACTGAATCGGAAAGTAAAAAGTCGAGAACaagAAAAAAGAGCCTTCGTAAAACAAAAGTAAAGAGAGTCTTAGTAAAATATGATTGTGACAAATGTGGCAAATCGTTTAAGAAAAGATCACACTTAGAACGGCATCATTTTACCCATATTGATGATAAACCAATCAAATGCGATCAATGTGGAAAAggATTTAAGCACGCAGAAGCATTAAAAGCACATTCGAGAAAACATTTACCATCACAAGTGAAAAATCGTTAcaaatgtgatgtttgtaataaaatgttaatttcgTCGACTGGATtaatatatcataaaaaaattcatgaagGAACTTACGAGTATGTTTGCGAAGTATGTGGTGCTAAATGTCGAACACAACGAAATTTGGTTGTTCATCGTCTCATGCATCAAACGGAAACTCCATTCCATTGTGAAATATGTACAAAGTCTTTTAAGACTGACTACGGACTCAAGAAACATCAATTAGTTCATAGTGAAGTAAAACCGCATGTTTGTGATGTTTgtggacaaaaatttaaagagaaaCGACGTTTGGTTCGACATCAAAACTCACATTCCACAGAgttgccatttgaatgcaaagAAACATCGATAAAAAAAGAGGAAACTCGAACTGAAGTCACTAAGCAATGTCCGAAATGTGATTTTTATTGTGAATCAACAACTGATTTAGAGGAACATATTGAATCCTTCCACGATGATTGGATATCTCCCGAATCAGAAACGTTTCCCGTATTAGAAAGTAAAAAGTCAAAGCCAAGTGGAAAGAGCCTTAGTAAAACGAAAGTAAAGAGAGCTTTAGTCAAATATGATTGTGAAAAATGTGGAAAATCTTTTAAGCACAAATCACATCTACAAAGACATCATTTCACTCATATTGATGATAAACCAATCAAATGCGATGAATGTGGAAAAAGATTTAAACACGCCGAAGGATTGAAAGAACATTCGCGAAAACATTTACCGGCGCAAGAGAATAATCAATAcaaatgtgatgtttgtaataaaatgttaatttcatCGAATGGTTTATTATATCATAAAAAGATGCACGAAGGAACTTACCAGTATATTTGCGAAGTATGTGGTGCTAAATGTCGAACACAACAAAATTTGGTTGGTCATCGTCTTATGCATCAAACAGAAACTCCATTCCATTGTGAAATATGTACAAAGTCttttaagACTGAATACGGACTCAAGAAACATCAATTGGTTCATAGTGACGCAAAACCGCATATTTGTGATGTTTgtggacaaaaatttaaagagaaaCGAGGTTTAGTTCGACATCAAAATTCACATTCCAAAGAGCTACCATTTGAATGCagttattgtaaaaaatgtttccgAGAAAAACGATTTCTACAGgtTCATCTGAGACAACACACAGGAGAGCGTCCATATTCGTGCAAAGAATGTAATCATCATTTTACAAATTcatcaaattatattaaacatatgCGAGGACGACATGGTAATTATAAACCTATTAAAAATGGAATAACATTAAGAAACCcgatagttttataa
Protein Sequence: MPIYLKYDTVVGINTMWLCNFLEETSIKKEENRTECTKQCPKCDVCCESTTDLEEHIESYHDDCMFPESEAFTESESKKSRTRKKSLRKTKVKRVLVKYDCDKCGKSFKKRSHLERHHFTHIDDKPIKCDQCGKGFKHAEALKAHSRKHLPSQVKNRYKCDVCNKMLISSTGLIYHKKIHEGTYEYVCEVCGAKCRTQRNLVVHRLMHQTETPFHCEICTKSFKTDYGLKKHQLVHSEVKPHVCDVCGQKFKEKRRLVRHQNSHSTELPFECKETSIKKEETRTEVTKQCPKCDFYCESTTDLEEHIESFHDDWISPESETFPVLESKKSKPSGKSLSKTKVKRALVKYDCEKCGKSFKHKSHLQRHHFTHIDDKPIKCDECGKRFKHAEGLKEHSRKHLPAQENNQYKCDVCNKMLISSNGLLYHKKMHEGTYQYICEVCGAKCRTQQNLVGHRLMHQTETPFHCEICTKSFKTEYGLKKHQLVHSDAKPHICDVCGQKFKEKRGLVRHQNSHSKELPFECSYCKKCFREKRFLQVHLRQHTGERPYSCKECNHHFTNSSNYIKHMRGRHGNYKPIKNGITLRNPIVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -