Basic Information

Insect: Nineta flava
Gene Symbol: -
Assembly: GCA_963920215.1
Location: OY986041.1:48272159-48282197[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.0015 0.056 14.5 7.2 1 23 212 234 212 234 0.98

2 19 9 3.3e+02 2.6 5.7 1 23 240 262 240 262 0.98

3 19 9.4e-06 0.00035 21.4 2.6 1 23 268 290 268 290 0.98

4 19 0.029 1.1 10.4 5.5 2 23 296 317 295 317 0.97

5 19 2.6e-05 0.00097 20.0 2.4 1 23 323 345 323 345 0.97

6 19 9.8e-05 0.0036 18.2 1.2 1 23 351 373 351 373 0.97

7 19 9.9e-05 0.0037 18.2 1.3 1 23 379 401 379 401 0.97

8 19 0.19 7 7.9 0.9 1 23 407 429 407 429 0.98

9 19 0.0012 0.044 14.8 1.6 1 23 586 608 586 608 0.98

10 19 2.3e-05 0.00084 20.2 3.8 1 23 629 651 629 651 0.98

11 19 0.00011 0.0042 18.0 0.4 1 23 657 679 657 679 0.96

12 19 2.8e-05 0.001 19.9 1.9 1 23 685 707 685 707 0.98

13 19 0.00012 0.0044 18.0 3.7 1 23 713 735 713 735 0.95

14 19 5.9e-05 0.0022 18.9 4.7 1 23 879 901 879 901 0.99

15 19 0.00026 0.0097 16.9 1.9 1 23 907 929 907 929 0.97

16 19 0.00057 0.021 15.8 2.2 1 23 935 957 935 957 0.99

17 19 8.3e-08 3.1e-06 27.9 1.6 1 23 963 985 963 985 0.99

18 19 0.00024 0.009 17.0 2.8 1 23 991 1013 991 1013 0.98

19 19 3e-05 0.0011 19.8 0.7 1 23 1019 1042 1019 1042 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.0015	0.056	14.5	7.2	1	23	212	234	212	234	0.98
2	19	9	3.3e+02	2.6	5.7	1	23	240	262	240	262	0.98
3	19	9.4e-06	0.00035	21.4	2.6	1	23	268	290	268	290	0.98
4	19	0.029	1.1	10.4	5.5	2	23	296	317	295	317	0.97
5	19	2.6e-05	0.00097	20.0	2.4	1	23	323	345	323	345	0.97
6	19	9.8e-05	0.0036	18.2	1.2	1	23	351	373	351	373	0.97
7	19	9.9e-05	0.0037	18.2	1.3	1	23	379	401	379	401	0.97
8	19	0.19	7	7.9	0.9	1	23	407	429	407	429	0.98
9	19	0.0012	0.044	14.8	1.6	1	23	586	608	586	608	0.98
10	19	2.3e-05	0.00084	20.2	3.8	1	23	629	651	629	651	0.98
11	19	0.00011	0.0042	18.0	0.4	1	23	657	679	657	679	0.96
12	19	2.8e-05	0.001	19.9	1.9	1	23	685	707	685	707	0.98
13	19	0.00012	0.0044	18.0	3.7	1	23	713	735	713	735	0.95
14	19	5.9e-05	0.0022	18.9	4.7	1	23	879	901	879	901	0.99
15	19	0.00026	0.0097	16.9	1.9	1	23	907	929	907	929	0.97
16	19	0.00057	0.021	15.8	2.2	1	23	935	957	935	957	0.99
17	19	8.3e-08	3.1e-06	27.9	1.6	1	23	963	985	963	985	0.99
18	19	0.00024	0.009	17.0	2.8	1	23	991	1013	991	1013	0.98
19	19	3e-05	0.0011	19.8	0.7	1	23	1019	1042	1019	1042	0.96

Sequence Information

Coding Sequence: ATGTCCTCATACTGTAACGTTTGTCGAATTTGTTTAACCGTATGTTGCGATTTTATGAACATCATTGAATTCGCTCCAGCCATAATGGAGTGTGCTCCTATCAAGATTATTCCAAACGATGGTTATCCGTCTGTAATATGTGAAGAATGCTTAGATAAACTTCAAGCTGCGCAACAATTTCGTGTTTTATGCATTCAATCGGATATCATACTAAGGCAGTCAAATGCTGAAATTACGATTGGAATACCGAACGGTATTGAACACGATACAACTTCAATGACCTCACAAGATGATCCGGATGATAAATACATTCATTTTATGAGCTGCGATATTGAATATGAACCTGAAATTTTACAATGTGATACAATAATTATAGATGATAGTTCAAATTCTGAAGATGATAATGCAGAAATAGAAAATACTATTATTGATTGTGATGGATTCCCAAATCGAATATGTGAAGCTTGTATAAATAAACTTGAAATTGCTCATCAATTTCGACTTTTGTGTCTACAGTCAGATGCAAAACTGCGCGAAACAACTTTTAAATCATCTAATGATTCATTTCACGATGGTAATAACATTGAATACgaattaataatagaaaaaaagaaagGTCGGCAAGGAGGTCCCTTCGTTTGTAAATTCTGTAACCATAAATTTAACCAAAGTTGTAACTTACAACGTCACGAAAGAATTCATACTGGTGAACGACCTTTTAAATGTGATCTGTGCTGTCGTAGTTTCGCTCAAGAATATGATTGCGTTAAACATAAACGTATCCATAATGATGAACGACCATATAAATGTGAGATTTGTGAAAAAACTTTTCGACAAACATCAACGTTACAACAACATAAATTACGCCATAACACAAGCCGACTCGAATGTAATGTATGTGATAAAACTTACCGATGTTTAcggagtttaaaaaaacatcatCGTATTCATACCGGGGATTATCCTTTTATATGCCACATATGCAGTAAAGGTTTTAATCAGAATGCAGCATTGAATACTCATATGTGTGTACATACGGGAGAAAGAGCATTTGCATGTGATATATGTTCTAAAAAATTGagtagtaaatataatttaataaagcatAAGAAAATACATACACAAGATCGTAAACATATGTGCGAAATATGTAGCAAAGCATTTTATGAAAAGAACGAACTGAATCAGCATTTACGGGTTCATAAGAGTGAACGATTATTTCAAtgttatatttgtaataaatggtTAACgtctaaacaaatattaatacaacATTTACGAACGCATACTGGTGAAAAACcatatcaatCTGGTCGCCATTtaccatataataatattgcaaGTGCAATAATGGTGTGCGTTCCAGTTGagATATCAATGAATGATGGCCTTCCTTCTATGATTTGTTGCACTTGCTACCAAAGACTATTAAATGTTCACGAATTTCGTGGCATttgtttaaattcaaataaaatcttATTGAATTCAAAATCGTTACAGAATGAATATTTAGAAATTCATATATTTCCTTCACTTAATGAAGACAATTCGATTGATCACTCTGCCGAACATACCAAAGATACATCTTCTCGTAAAAATTTAACTGACGTTGATGTCACGCTAcccgaagaaaatattttagaaaaccaTGCTTGTGCTTCAGAGGAAGAAATCATCGAGGAAACTATCTCAACAGAGGATAGTAACACAGCTAATGAAAATCTTAAGTATCGTTTAGGACGCCCTAAAGGGGTatacatttgtaaatattgCGAACGAATTTGTGTAAATAACACAACTTTACGTATACATGAAAGAGTTCATACTGtcgggttaaaaagtacaTTAGGCCGTCACTCTAGAATCCATACAGGCGAAAAACGATACTCGTGTGATGTATGCAACAAAAGTTTTAGACATCGAAATAGTTTAATTATACATAAACGACGGCATACCGGTGATCGACCATATATTTGTGATTATTGTAGTAAACAATTTACGGATAATGCTGGATTACGCCAACATCGTGTTGTCCATACAAAAGAACGTAATTTTTCATGTTTACAATGTGACAagtcattttcatttaaatcctCGTTAGATACACATGTTCGAATGCATACCGGTGAACGgccatttttatgtaatatatgtaGTAAAACATTTCGACAACTTACACATTTTCAAACGCATATGAATGCGCATACCGGCGAACGACCATTTAAATGTCGAATAGCTCCAGATGATGGCCTTCCACACCAAATATGCACAGAATGTGCACAAAAAGTACAATATgtacaacaatttaaaaatcaaataatatcatCGGATACAACACTGCGACAATACATTCAAAACTACAATGACACAAAACCGGACGTGGATTATACTTCAGAGCCTGTAGATGTCACACCCGATATTCATATGTCATACAATGACATCCACGTGAAAGAAGAGGATTCACATAACGCTGGTGATGATGATAAAAGTGATTTGAAACCGTTAAAACCGATAAAaaaacgaaaagcaaaaaagaAGAAACTAGTAACTGATGATATATTAGATGAATTTGATGTAAAAGTACCAAGAATACGAAAACCTCGAAAACAATATGATAGACGAATAGGCGGTCCTTTTAAATGTGATCAATGTGATCGTACCTGTACTACAAAAGGTAATTTGTCGTTACATAAACGTACACATACCGGTGAAAAACCACACATGTGTGATTTCTGTGGTAAAAGTTTTGCATGGAGTTCGTATTTAATAAGTCATAGACGGACACATACAGGTGAATACCCATATCAATGTGATTTTTGTAGTAAACGATTTGTACGTATCACTGAGTATAAAGATCATCGTCGTATACATACCGGTGAGCGTCCCTATAAATGTGATGGTtgtgataaaagttttaaacaaaattcacAATTACGTGTACATAAGCGTATTCATGCtggtattttcaattttgaatgcGATACATGTAATAAACGTTTCAAAACAAAGTATGTTATGATTAAACATAAACGTATACATACGGGCGAGCGACCATATGAATGTCCAATATGTTACAAGAAGTTCTCACAAAATGCATCATTATTTAATCATAATCGGCTAGTGCACAAAATCAGTTCAACGCGACCTGTTACTTTAGAAGCCTACAATCTGAAACTTGAAAAAGATTTATTGGAAAAAGCAAATGtgtga
Protein Sequence: MSSYCNVCRICLTVCCDFMNIIEFAPAIMECAPIKIIPNDGYPSVICEECLDKLQAAQQFRVLCIQSDIILRQSNAEITIGIPNGIEHDTTSMTSQDDPDDKYIHFMSCDIEYEPEILQCDTIIIDDSSNSEDDNAEIENTIIDCDGFPNRICEACINKLEIAHQFRLLCLQSDAKLRETTFKSSNDSFHDGNNIEYELIIEKKKGRQGGPFVCKFCNHKFNQSCNLQRHERIHTGERPFKCDLCCRSFAQEYDCVKHKRIHNDERPYKCEICEKTFRQTSTLQQHKLRHNTSRLECNVCDKTYRCLRSLKKHHRIHTGDYPFICHICSKGFNQNAALNTHMCVHTGERAFACDICSKKLSSKYNLIKHKKIHTQDRKHMCEICSKAFYEKNELNQHLRVHKSERLFQCYICNKWLTSKQILIQHLRTHTGEKPYQSGRHLPYNNIASAIMVCVPVEISMNDGLPSMICCTCYQRLLNVHEFRGICLNSNKILLNSKSLQNEYLEIHIFPSLNEDNSIDHSAEHTKDTSSRKNLTDVDVTLPEENILENHACASEEEIIEETISTEDSNTANENLKYRLGRPKGVYICKYCERICVNNTTLRIHERVHTVGLKSTLGRHSRIHTGEKRYSCDVCNKSFRHRNSLIIHKRRHTGDRPYICDYCSKQFTDNAGLRQHRVVHTKERNFSCLQCDKSFSFKSSLDTHVRMHTGERPFLCNICSKTFRQLTHFQTHMNAHTGERPFKCRIAPDDGLPHQICTECAQKVQYVQQFKNQIISSDTTLRQYIQNYNDTKPDVDYTSEPVDVTPDIHMSYNDIHVKEEDSHNAGDDDKSDLKPLKPIKKRKAKKKKLVTDDILDEFDVKVPRIRKPRKQYDRRIGGPFKCDQCDRTCTTKGNLSLHKRTHTGEKPHMCDFCGKSFAWSSYLISHRRTHTGEYPYQCDFCSKRFVRITEYKDHRRIHTGERPYKCDGCDKSFKQNSQLRVHKRIHAGIFNFECDTCNKRFKTKYVMIKHKRIHTGERPYECPICYKKFSQNASLFNHNRLVHKISSTRPVTLEAYNLKLEKDLLEKANV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -