Nfla012631.2
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- ZIPIC
- Assembly
- GCA_963920215.1
- Location
- OY986042.1:71428572-71435978[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0028 0.1 13.6 0.7 1 23 211 234 211 234 0.97 2 21 0.00055 0.02 15.8 4.9 2 23 263 284 262 284 0.98 3 21 0.0058 0.22 12.6 1.2 2 23 293 315 292 315 0.94 4 21 6e-05 0.0022 18.9 1.9 2 23 325 347 324 347 0.97 5 21 0.00012 0.0043 18.0 1.3 3 23 361 380 360 380 0.97 6 21 0.00068 0.025 15.5 0.1 3 23 388 409 386 409 0.96 7 21 0.018 0.66 11.1 10.9 3 23 420 440 416 440 0.92 8 21 7.5e-05 0.0028 18.6 0.9 1 23 446 469 446 469 0.96 9 21 0.006 0.22 12.6 1.1 1 23 475 497 475 497 0.98 10 21 0.00015 0.0055 17.6 0.2 1 21 503 523 503 524 0.96 11 21 0.002 0.074 14.1 0.9 1 23 691 714 691 714 0.98 12 21 8 3e+02 2.7 6.0 2 23 720 741 719 741 0.97 13 21 0.00072 0.027 15.5 5.2 2 23 743 764 742 764 0.98 14 21 0.0014 0.052 14.6 0.7 2 23 773 795 772 795 0.95 15 21 0.00027 0.01 16.8 1.7 2 23 805 827 805 827 0.97 16 21 0.0019 0.07 14.2 0.9 3 23 841 860 839 860 0.96 17 21 6.5e-05 0.0024 18.8 0.1 2 23 867 889 866 889 0.95 18 21 0.00012 0.0046 17.9 3.0 1 23 898 920 898 920 0.96 19 21 0.00029 0.011 16.7 1.4 1 23 926 949 926 949 0.96 20 21 0.029 1.1 10.4 1.2 1 23 955 977 955 977 0.98 21 21 1.9e-06 7.2e-05 23.6 0.5 1 23 983 1005 983 1005 0.99
Sequence Information
- Coding Sequence
- atggaTTTAAAATTCGTTTTAGTGTCCGATTTTGAGAAAGTTTGTCGTATTTGTATGAAATTTGACAAAACACTTATATCAATTAActcattgaaaataattgatatgatAACAGAGTGTTTTTCTGTACAGATTTGGGAAAATGATGCTCTACCAAATCAAATATGTAACGGATGTTTtcttcaattacaaaataccattaattttaaacaattatgtGAAAATTCAGATAACGCATTTCGTCAAATTATTGAACAAAACGATTTGACTAACGTAAAAAATGAAGAATTGGATAATCTAAATAGCCCAATATATATCAAAGAAGAGGACGATGTTGATAATGTTCCAAATCAGAAAATTTTGGGAAATGTGAAAACTAGAATTGAAGATGACTCTGAAAAATCAgaagcaaaaattaaaagattattagaaataaaaaacggACATAAACTggaattgaataaaatacaaaccaGGAAACTAACTATTCAGTATAAATTTGATGAGGATAGTGATggttatgaaaatgaaaatacaaatacaaatgaaGAAAATGATTTCGATTATGAAGGTGAAGATGAAAAATCCGATTTAGAGGATTACAACTGCGAAAAATCCGATTTAGCGGAATACAATTGTGAAACATGTTCTAAGGCATTTAAAAAAGTGGAAGCACTTGGAttacatatgaaaaaaaaacataatgcaGAAGGCACTAAATGTAGAAGATGTTCATTAATATGTTACCATCAGTTACATTTACGTGTCCATGAAAAATCACACAATAAGTGTCACGTTTGTAATTTATCATTTACAacgtcaaaaaaattaacacaacATAAATTAACCCATGATAATGAAGACATCCCTGAATTATCGTGTAAAATGTGTCCAGCAAAATTAACAAGTAAAAACAGTTTATACAAACACATgcgatttttacataaaattgaaacaatgaAGCAAAGTTTAAAATGCGATAAATGTGATGAAACATTCACAACAAAGCgcgtttttgaaaaacatattcgTAAAATGCATCCAAAAGCAAAAATTAAGCATAAAGAACAGGTCGCAAATTGTGAAATTTGTGGTAAATCATTAACACGACGTAATCTACGCAGACACATGTTAACACATGGAGATCGGGATAAAATTGCTTGTGAGGTTtgtgcaaaaatatttatatcacagGAAACATTAAcaaatcatattaaaatttatcacaAGAATTCGGAACCCGTTTATAAATGTTTGTGTAATCAATGTGGACACAAGTTTCGTTCGAATTGCCATCTAAATAAGCACTTGTTAACACACACTAAAGAACGTCCTTATCCGTGTGATAAATGTGACAAAACGTATCGTACATTATTTCAGTTAAAAGAGCACGTATCACGAATTCATTTGAATGAACGCAATTTTGTGTGTACGTATTGTTCACAAGCATtttacgataaaaaaattttattgaatcatgtAAGAAGACACACTGGTGAGAAACCATTTAAATGCCTAATGTGTGAAAAAAGATTTATACAAAAAGTTGCACTAAATGTTCATATGAAAaTTTGGGAAAATGATTCTCTGCCAAATCAAATATGTAACGCATGTTTtcttcaattacaaaattccattaattttaaacaattatgtGAAAATTCAGACAACACATTTCGTGAAATTATTGAACAGAATAAAACTAGTTTATGTTACAACCAAAATAATTCGGATAACGTAAAAAATGAAGAATTAGATAATTTAAACAGTCCAATATATATTAAAGAAGAGGATGATCTTGATaacgtttcaaatattttggaaaCTGAGAAAACTAGTATTTATCAGAAGAATGACtcgaaaaaatcaaaacaaaacactGGAGAAAGGGTGGAAATAAAAAACGAAGATAAACCGGAATTGAATAGAATACAAACCAGAAAGAAAaccattcaatataaatatgaagAGGAAAGTGATAgctatgaaaatataaatgaagaAATTGATTCCAATTATGAAAGTGAAGATGAAAAATCCGATATAGGTGAACAGTCACAGATAGTTGATTACAAGTGTGAAACATGCTctaggatatttaaaaaagtagatGCACTTGGTTTACATATGAAAAGAAAACATAATGTAGAAGGAAATAAATGTAGAAATTGTTCACTAATATGTTATCATCCGTTACATTTACGTGCCCATGAAAAGTCACACAATAAGTGTCACGTTTGTAATTTATCATTTTCAACACGAAAGAAATTAACACAACATAAATTAACACATGAAGATGAAGACATGCCTGAAATAACTTGTAAAATGTGCCCAGCAAAATTAACAAGTAAAGATAGTTTATACAAACACATGCGATTTATTCACAAAGTCGAATCAACGAGAAAGAGTCGAAAATGTGATAAATGTGatgaaacatttaaaacaaaacgcATTTTAGAAAAGCATATACGTAAAATACATCCAAAAGCAAAAATTAAGTTTAGAGAACAGATAGTGAATTGCGAGATTTGTGGTAAATCATTAAAACAACGTAATCTACGTTACCACATGACAACTCACGGAGAACGTGATAAAATTTCTTGCGAATATTGTGATAAAATCTTTATATCACCAGAAACATTAACAAATCATGTGCAAATTTATCACAAGAATTCCGGacctgtttataaatatttatgtaatcaaTGTGGTCTTAAGTTACGTTCGAATTACCATTTAACTAAGCATATGTTAACACACACTAAAGAACGTCCTTATGCATGTGATAAGTGTGATAAAACGTATCGTacaatgtttcaattaaaagttcACACATCACGTATTCATTTGAATGAACGTAATTTTGTGTGTACTTTCTGTTCACAAGCATTTTatgataagaaaattttattgaatcatgtAAGGAGACACACTGGTGAGAAAccatttaaatgtcaaatgtgtgaaaaaagttttatacaaaaagttGCACTAAATGTTCATATGAAAGTGCACACAAGCTCACTGTAA
- Protein Sequence
- MDLKFVLVSDFEKVCRICMKFDKTLISINSLKIIDMITECFSVQIWENDALPNQICNGCFLQLQNTINFKQLCENSDNAFRQIIEQNDLTNVKNEELDNLNSPIYIKEEDDVDNVPNQKILGNVKTRIEDDSEKSEAKIKRLLEIKNGHKLELNKIQTRKLTIQYKFDEDSDGYENENTNTNEENDFDYEGEDEKSDLEDYNCEKSDLAEYNCETCSKAFKKVEALGLHMKKKHNAEGTKCRRCSLICYHQLHLRVHEKSHNKCHVCNLSFTTSKKLTQHKLTHDNEDIPELSCKMCPAKLTSKNSLYKHMRFLHKIETMKQSLKCDKCDETFTTKRVFEKHIRKMHPKAKIKHKEQVANCEICGKSLTRRNLRRHMLTHGDRDKIACEVCAKIFISQETLTNHIKIYHKNSEPVYKCLCNQCGHKFRSNCHLNKHLLTHTKERPYPCDKCDKTYRTLFQLKEHVSRIHLNERNFVCTYCSQAFYDKKILLNHVRRHTGEKPFKCLMCEKRFIQKVALNVHMKIWENDSLPNQICNACFLQLQNSINFKQLCENSDNTFREIIEQNKTSLCYNQNNSDNVKNEELDNLNSPIYIKEEDDLDNVSNILETEKTSIYQKNDSKKSKQNTGERVEIKNEDKPELNRIQTRKKTIQYKYEEESDSYENINEEIDSNYESEDEKSDIGEQSQIVDYKCETCSRIFKKVDALGLHMKRKHNVEGNKCRNCSLICYHPLHLRAHEKSHNKCHVCNLSFSTRKKLTQHKLTHEDEDMPEITCKMCPAKLTSKDSLYKHMRFIHKVESTRKSRKCDKCDETFKTKRILEKHIRKIHPKAKIKFREQIVNCEICGKSLKQRNLRYHMTTHGERDKISCEYCDKIFISPETLTNHVQIYHKNSGPVYKYLCNQCGLKLRSNYHLTKHMLTHTKERPYACDKCDKTYRTMFQLKVHTSRIHLNERNFVCTFCSQAFYDKKILLNHVRRHTGEKPFKCQMCEKSFIQKVALNVHMKVHTSSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -