Basic Information

Insect
Nineta flava
Gene Symbol
Ift140_1
Assembly
GCA_963920215.1
Location
OY986041.1:32469416-32497070[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.0015 0.055 14.5 1.3 1 23 1918 1940 1918 1940 0.97
2 18 0.64 24 6.2 2.6 1 19 1946 1964 1946 1968 0.87
3 18 4.6e-05 0.0017 19.2 0.7 1 23 1974 1996 1974 1996 0.99
4 18 0.00024 0.0091 16.9 3.5 1 21 2002 2022 2002 2024 0.94
5 18 0.0002 0.0074 17.2 4.6 1 23 2030 2052 2030 2052 0.99
6 18 0.00019 0.007 17.3 5.3 1 23 2058 2080 2058 2080 0.97
7 18 0.00012 0.0045 17.9 7.6 1 23 2086 2108 2086 2108 0.97
8 18 7.4e-07 2.7e-05 24.9 2.7 1 23 2114 2136 2114 2136 0.98
9 18 0.00054 0.02 15.9 6.7 1 23 2142 2164 2142 2164 0.97
10 18 0.0001 0.0039 18.1 5.5 1 23 2170 2192 2170 2192 0.97
11 18 3.5e-06 0.00013 22.8 2.8 1 23 2198 2220 2198 2220 0.98
12 18 4.9e-05 0.0018 19.1 7.9 1 23 2226 2248 2226 2248 0.98
13 18 2.5e-05 0.00093 20.1 6.7 1 23 2254 2276 2254 2276 0.98
14 18 0.00013 0.0047 17.8 7.7 1 23 2282 2304 2282 2304 0.98
15 18 8.2e-05 0.0031 18.4 7.1 1 23 2310 2332 2310 2332 0.97
16 18 0.00061 0.023 15.7 0.5 1 23 2338 2360 2338 2360 0.97
17 18 0.24 9 7.5 4.5 1 23 2370 2392 2370 2392 0.98
18 18 1.4e-06 5.3e-05 24.0 0.9 1 23 2398 2420 2398 2420 0.96

Sequence Information

Coding Sequence
ATGTCCTTATATTTTGACACTCCAGTACAGTTCAAAGAAATTGGTGCTATTACAACCAATGGTGTTTGGCATCCAACTTCACCGTTATTGGCCGTTGCAAGTTATTCCCAAGAACGTGGAGGTTTTGTCAGCATTTTTGatgatttgGGAGAGCCGCTAAGAGATGTTGAAACACCATGGCATCCCGTATCACAAGTAACGGCACTTGCATGGCGTCCAGAAAAACCATTACTAGCAGCCGGTTGGGAAGATGGTGCGTTACGAATTTGGGATGGATCTGGTTCTGCATTTACTACAGTACCGGCTCCACATACATCACCTTTAACCCTTTTAGCGTTCAGCGAAAAAGGTGGTCGATTAGTATCTGCAGATTCGGCTGGTTCATTAGTTGGATGGAAAGTCGATTCACGCAATCAGTTGTACACCTCGTTTCATCATGACTTAAAAGAAAGTATTACGCACATAACATTTCGATTAACCGTCACAAATAACGTACAAAAAGAAATTAACAACTTAGCAAAGGCTGCCGTAAATGGTGATGAACAAGCGTTAGACTTATTCAGTAGTTGGCGACCACGAACAGCAGCTAATCGAATTAATGTTCATGCAAATACAAATGACaatcattgtttttatattgGAACACAATCTGGTGCAGTTTATTACATTAATCAGTCGGGCAGTTGTAGTGAAGTATTAAATACGGATGGACAACCATTAATCAGTATTATGTATCATCCTAATAAAGAtgcattaattattatgatgGAAGGGTTAAATATTGGGCATTTTGCTGTGGATACAAATGGTCATTTGACTGAATTGGTTAAAGTGAAACTAAGTGGTAAATCACAAGCTTTTCGTGGTGCTAATAGTCAAGGCTTAGTTTGGGCTGGATCTGGTCTTTTAGCGATATTAACAggGGACATGACAGTTCGAATATGGGACATCGACAATAGtgacaattatattttatccacATCCGAGCATCATCATCGAATAATGGGTGAAGATCGAGATAATATGGAGAGTGCAATTTTCACATGCATATCATACTGCAAATTAAATAACATGTTATGCGCGGGAACAAATTTAGGGCAAATCTATTTTTGGCAATATTCTGGTGGACCACACAACGATAATAAGTATATTGAGAATCCAGAAAGTGTCTggcaattaaaaacaattaatcaaATTAGTGGtacaattaaacaattattttgggGATCCATAAATTTAGTTGTACCATTATTATCCGTAAATTGTATTACTAAAGTTTACATATTAAAAGAACAAACATTAAATACATGTTATACAGAGCATATTTGGGCAACTCAAATAAATGCATCGTCAGTGATTTTAAGCACAGATACTGAAAATATTACGCTAAAATCAGAGATACAAATTACATGTATGGCAGTATCCAAAGATTATATTGCCATTTCAAATGGGAAGATTATTACTGTTTATGAAATTATATGGTCTGAAACCACTGGTGCTTACCAAGATACTTACAAATCATTTCATACGAAATTACTACAAtcttttttatgtgaaaatgaAATACTGTAcatttatgaaaagaaaattattgttctaACAACATTCGGAATCCAAATACGTATGTTAAATGGAATACCTTCGACAACAATCCAAACAATTAACGAAGAAGGTGAACCAATCGGAAtcgatttaaataattcattcctAACGATTTACACAATCAAcggatttattaaattaattgacttAAGTAAATCATCAACAGATATTAAatcaatatcaaaaaatatttatgaaatgtgCTCCGATTTTGGTGAAATTATTTGGGccaaatcaaattcaaatggtACAAAAATTGCATTCACTGTAgcgaatacaaatttaatacctgatcaaaaagtatattttatggaTGTGGAAAATGATACTTTAAAAGTATTTGAACACTTTTGCAGTGAACTGAGTGAAGATAATGATGACAATGATGTTAAGGAAAAAATCGATGATGATGTTGGTAAAATACAAGCAATTGGTTTAAATAAtcatttggaaaataaaaaagctTGTGCGAATCGTTTACCAGTGAAATTTTTTTGGGATACACAAGACGaacgtttgtttatttgtagTGCAAAGAAATTGCGTAATAAAAATCAGCATAATAAATCAGAGActgatttttatacaaaaacgaATAGCTTATTTTTTTCTGATATTAAAGAAATTCcgTTACATCCAGAAAATCCATTAGTAATTACAGATCAAATTATTGTAAGTTTATTTATAACAGACAatcatgaaattattttaaaagaagtacAAGAACTATATTCCGATGCCCAATTAATTGGTTTATGCTGTCCGTatattgtaacgcttgaaaatagtgTTATTAAACGATTATTACTCTCCGATTTCCATGgaatggaaaaatatgataCATCATTAAAAAAAGCTTTACTCGATTTCAGTTACTATTTGAGCTTAGgaaATATGGATGCAGCAATTCAAGCAATACGCCTTTTACCCAATGGTAGTAATGCGTGGAGGAATTTAGCAAAAGTATGTGTAAAAACTAAACGAGTTGATGTTGCAAGAATATGTTTAGGGCATGTCGGAGCTGCACGTGAAGCTCGTGCTTTACGTTGTGCAATGGAAGATCCAACTTTAGAACCCGATGCCGTGGTTGCAGTTTTAGCTGTACAATTAGAAATgcttGATGAAGCCGAACAATTGTACAAGCAATGTAAACGGtatgatttattaaataaattataccaaGCCCGTCATAAATTTTCTCAAGCATCATCAATTGCACAAAAATTTGATCGTATTCATATTCGATCAACTGCTTACGCTTGGGCAAAATCTGCTGAATTGGCAAATGATATACCTAGTGCAATATTACGTTATGAGGAATCGGGTACACATCGTGATAATGTACCACGATTATTGTTGGATAAACCTAAAGAATTAGAGGAATATATTAAGAAAAGCAATGACAAagAGTTAATGAAATGGTGGGGACAGTACTTGGAATCAATCGGTGATATGTCACAAGCTTTACACGCATATGAAGCAGCTGGTGATTGCTTTTCTCAAGTTCGTGTCCTTTGCTTCTCACAACAGGAAAGTCGTGCTGCGCATTTAGCACGTAGTTCTGGTGATAAAGCAGCTGCCTATCATATGGCACGATACTATGAAACTAATGATGATATCGAAAACGCTGTGGCATTTTTTATTAAAGCTCAAGCATATGccAATGCTGTTCGATTATGTAAAGAGCATAACATGATTGATGAACTATGGAATATCGCGTCATTAGCTACAAAACGGGATAAAATGGAATGTGCaagatattatgaaaatatgggTGATATTGATAAAgctattattttatatcatcGTTCTGGAATGATCCATAAAGCTTTGGATTTAgcatttaaatctaaaaaatatgatACTTTACAAGTAATAGCTACAGATTTAGATACAAATTCCGATCCAGCTTTAGTTCAAAAATGTGCAaattattttgtagaaaatgaaCATTATGAAAAAGCTGTTGATTTATTAGCTATTGGAAAACAGtatTTGGAAGCCTTAGATATTTGCTTACAACATAATGTACAAGTGACGGAAGTATTAGCCGAACGACTTACACCGGAGAAAGATGAAATGGATGAGCAAACTCGTATATCTGTTTTAGAGAAACTAGCTGAAAGTTTACAAATGCAAGGAAATTATCATTTagcaactaaaaaatttacacaagcAGGCAACAAAATACGGGCAATGAAAGCCTTATTAAAATCTGGCGatacagaaaaaatattattttttacaaatgtcTCCCGACAAAAAGAGATTTATATTATGGCCGCTAATTATTTACAATCACTAGATTGGCAAAATCAACCAAATATATTacgtaatattataaatttttattcaaaaggtCGTGCATTAGATTTGTTGGCGAATTTTTATGTTGCTTGTGCCCAGgtTGAAATTgatgaatttcaaaattatgaaaaagctTTAGGTGCGTTAACTGAAGCTAGTCGAGCATTAAGTAAAGTAACAGCACCTCAAGATCCGGGACGGCATAGGCGGGCTAATGATATTGTAAATGCACAAATGACTGCAATTAAACGGTTCGTTGATTGTCGGCGATTATTTGAAAGAGGTGATATTGCAGGAGgTATGAATCAATGTCGACAATTAATAAACTCTGGTGAAtcaaatatcgaaaaatatgtaCGTAAAGGTGATATCTATGCTGTAATGATCCAACATAGCTTAAATGCAGGTGATTCAACAGAAGTTAAACAATTACTTATTGAAATGAAACAATATTTAGCTACAACAAATGTTAgcttaacatattatttaagcAGTGATGTTATACAATCACTAGCTAAAACATTAGGTATACCCTTAAGTTCATTACTACCACAAAAAAATGTGAGCGAAAATTCCCCTGAAGAAAATGAACAAGAAATACAAGAAGAAgatTCAAATCGAGGCAATCAACATCAGACCACAACCACTACTGTTCCAACAGATTTGAGAGTAAATCCTACAGCATTAAATGCAGTTGCATTATCTAGTGTTGCCAAATATTGGGTACTCACTAATTTATTACCAGGACCAATACCACAGGTTTCTGTTTATGGCCTTCCAACCACCACAACGACTACAAAAGTTGAAAATGGAAAATCTGGACAGGATACAATGTTTCAACAACATTCTAGTATATTATCAACGGATCCATTACTGTTACCACATCACAGCTCCAATTTAAATACCAGTGGTATAAACACCCAACAAGTACCAGTTAGTATTTCAACATCACAAGGTGTTACAAATATCACAATACCAACATCAATGTCACATTTACAAACTGTTGATACAAGTAATCAACAACAGGTGAatcaacaaaatgaaaattccCATCATAATCAGCAGCAAAACACtgaacaacaacagcaacatcAACAATTGAATAATACAAATACGAATCAACAACATCAACAGAATATAGTACAAGTACAAGTACAAGATAATTTAGTAAGTGTTATTGAAGAGCAGAAAGATACAAAAGCACATTTGGCACATTTAACACAAGAATTGAGTCAACAAGATgagaatcaatttaaaattgagaatcaacaaaatttaactGTACAACAATTACAACAGTTAGGTGTTCATCATGTGTTGGACGATTCTGTGTTAAAATCAGATAATTCTTTAACAATCCCACAAGACAGTGGTGATCCATTACAAATTGTTAAAGATGAAAAAGATAATTCGGCAAAATTATTAAGTGGTACACAATTCCAAATACCTGATTTAAAAACTGGTGGACATCATATGATGGATGTACGCACTGTTGATGGAAGTATTGTTAAAATATCAACCGGTGGTATACAAGACCAAGATCTTGCTAAAACACTGGGTGTTGAAATGGTATCTAGTATGTATAAGGTAAATGTTGAGGATATTAACCAGTTACTAGCGTATCATGAAGTTTTCGGCAAGCTACAAAACGACATTACGCCAACTTCACCAATTGTCACACAAAATAGTACCCATATTGTTACAAATACATCGGCGGTAGCCGGAAATGTAAATATCCAATCACCAAATTTAAATATCGTGAAAACTGACCAAGAGGTGACTGCAACTACTATCAACCCAGCTGGTACAGATGCTTCAGGAGCTGTAGTTAGTAGCGGAACGCATGTATGTGATTTATGTGGAAAAATGTTCCCGTTTCGTTATCAAGTTATTGTACATCGACGCTATCATGCTGAACGAAAGCCTTTTACCTGTCAAGTTTGCGGCAAAGCATTTTCATGTGCCGCAGAGTTGACAGGTCATGGAAAATGTCATTTAGGTGGTAGCATGTATACGTGTGCAATATGTTTTCACGTATTTGCTAATGCTGCCTCTCTAGAACGACACATGAAAAGGCATTCCACTGATAAACCATATGCATGTACAATATGTGGCAAATCGTTTGCACGTAAAGAACACTTAGATAATCACACACGTTGTCATACAGGTGAAACACCATATCGATGCCAGTACTGTGCGAAAACGTTCACACGTAAAGAGCATATGGTGAATCATGTGCGTAAACATACTGGCGAAACACCACATCGTTgtgaaatatgtaaaaaatcgtTTACACGCaaagaacattttatgaatcaCGTAATGTGGCATACAGGTGAGACACCGCATCATTGTACACTGTGTGGTAAAAAGTATACACGTAAAGAGCATTTGGCAAATCATATGCGCTCACATACAAATGATACTCCATTTCGATGTGAGATATGTGGTAAGTCGTTTACACGTAAAGAACACTTTACGAATCATATAATGTGGCATACAGGTGAAACACCGCATCGATGTGATTTTTGTTCGAAAACATTTACACGTAAAGAGCATTTATTGAATCATGTACGTCAACACACTAATGAATCGCCCCATCGATGTGGCTACTGTTCTAAGTCGTTCACACGTAAAGAGCACTTAGTGAATCATGTTCGACAACATACTGGGGAAACACCATTCCGATGTAGCTATtgtccaaaagcattcacacgCAAAGATCATCTAGTGAATCATGTGCGTCAACATACTGGTGAATCACCACATAAATGTACTTATTGTACAAAAAGTTTTACGCGTAAAGAACATTTAACGAATCATGTACGCCAACACACGGGTGAATCCCCACATCGATGTCAATATTGTTCAAAATCATTTACACGTAAAGAACATTTAACAAATCATGTTCGAATACATACAGGTGAATCTCCACATCGTTGTGAATTCTGTCAGAAAACGTTCACACGTAAAGAACATTTAACCAACCATTTACGACAGCATACAGGTGAAACACCTCATTGTTGCAATGTGTGTTCAAAACCGTTTACACGTAAAGAACATTTAATAAACCATATGCGTTCGCATACTGGTGAACGGCCTTTTGCTTGTACTGAATGTGGTAAATCATTCCCGTTGAAGGGGAATTTGTTATTCCATCAACGATCGCATAATAAAGGCGCAAATGCTGAACGGCCATTCAGATGTGATTTATGTCCGAAAGATTTTATGTGTAAGGGTCATTTAGTGTCACATAGACGATCACATAGTGGTGAGAAACCCCACGCATGCCCCGATTGTGGTAAAACATTTGTTGAAAAAGGGAACATGTTACGTCATATGCGTAAACATAATACAGATGCTGCAAATAGTACGACAAATACAGCTGTCACAACAATAGCAGCTGTTGCTGCCAATACTGTGGTTACAAATGTTACCACCCAAGTACAACAacagcagcaacaacaacagcaacagcagcaacaacaacaacaacagcagcagcaacaacaacaacaacaacagcagcaacaacaacaacaacaacaacaaaatgcaCAAACCAATCAGAACACAACTAGTTTACAAATACCGCAAGTGACACAATCGCAACAAACATTGGCTGCACAAGTTGCCGCAGCAAATCAAGGTGGTGTTATTTCACAAACAGTGCCCACTGTTGGCCATATGCAAATACATCAACAAGGAAATCGACCTGTTGTGGTACCCACACCAAATGGTAATGTTTTAGcgtcttattaa
Protein Sequence
MSLYFDTPVQFKEIGAITTNGVWHPTSPLLAVASYSQERGGFVSIFDDLGEPLRDVETPWHPVSQVTALAWRPEKPLLAAGWEDGALRIWDGSGSAFTTVPAPHTSPLTLLAFSEKGGRLVSADSAGSLVGWKVDSRNQLYTSFHHDLKESITHITFRLTVTNNVQKEINNLAKAAVNGDEQALDLFSSWRPRTAANRINVHANTNDNHCFYIGTQSGAVYYINQSGSCSEVLNTDGQPLISIMYHPNKDALIIMMEGLNIGHFAVDTNGHLTELVKVKLSGKSQAFRGANSQGLVWAGSGLLAILTGDMTVRIWDIDNSDNYILSTSEHHHRIMGEDRDNMESAIFTCISYCKLNNMLCAGTNLGQIYFWQYSGGPHNDNKYIENPESVWQLKTINQISGTIKQLFWGSINLVVPLLSVNCITKVYILKEQTLNTCYTEHIWATQINASSVILSTDTENITLKSEIQITCMAVSKDYIAISNGKIITVYEIIWSETTGAYQDTYKSFHTKLLQSFLCENEILYIYEKKIIVLTTFGIQIRMLNGIPSTTIQTINEEGEPIGIDLNNSFLTIYTINGFIKLIDLSKSSTDIKSISKNIYEMCSDFGEIIWAKSNSNGTKIAFTVANTNLIPDQKVYFMDVENDTLKVFEHFCSELSEDNDDNDVKEKIDDDVGKIQAIGLNNHLENKKACANRLPVKFFWDTQDERLFICSAKKLRNKNQHNKSETDFYTKTNSLFFSDIKEIPLHPENPLVITDQIIVSLFITDNHEIILKEVQELYSDAQLIGLCCPYIVTLENSVIKRLLLSDFHGMEKYDTSLKKALLDFSYYLSLGNMDAAIQAIRLLPNGSNAWRNLAKVCVKTKRVDVARICLGHVGAAREARALRCAMEDPTLEPDAVVAVLAVQLEMLDEAEQLYKQCKRYDLLNKLYQARHKFSQASSIAQKFDRIHIRSTAYAWAKSAELANDIPSAILRYEESGTHRDNVPRLLLDKPKELEEYIKKSNDKELMKWWGQYLESIGDMSQALHAYEAAGDCFSQVRVLCFSQQESRAAHLARSSGDKAAAYHMARYYETNDDIENAVAFFIKAQAYANAVRLCKEHNMIDELWNIASLATKRDKMECARYYENMGDIDKAIILYHRSGMIHKALDLAFKSKKYDTLQVIATDLDTNSDPALVQKCANYFVENEHYEKAVDLLAIGKQYLEALDICLQHNVQVTEVLAERLTPEKDEMDEQTRISVLEKLAESLQMQGNYHLATKKFTQAGNKIRAMKALLKSGDTEKILFFTNVSRQKEIYIMAANYLQSLDWQNQPNILRNIINFYSKGRALDLLANFYVACAQVEIDEFQNYEKALGALTEASRALSKVTAPQDPGRHRRANDIVNAQMTAIKRFVDCRRLFERGDIAGGMNQCRQLINSGESNIEKYVRKGDIYAVMIQHSLNAGDSTEVKQLLIEMKQYLATTNVSLTYYLSSDVIQSLAKTLGIPLSSLLPQKNVSENSPEENEQEIQEEDSNRGNQHQTTTTTVPTDLRVNPTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPTTTTTTKVENGKSGQDTMFQQHSSILSTDPLLLPHHSSNLNTSGINTQQVPVSISTSQGVTNITIPTSMSHLQTVDTSNQQQVNQQNENSHHNQQQNTEQQQQHQQLNNTNTNQQHQQNIVQVQVQDNLVSVIEEQKDTKAHLAHLTQELSQQDENQFKIENQQNLTVQQLQQLGVHHVLDDSVLKSDNSLTIPQDSGDPLQIVKDEKDNSAKLLSGTQFQIPDLKTGGHHMMDVRTVDGSIVKISTGGIQDQDLAKTLGVEMVSSMYKVNVEDINQLLAYHEVFGKLQNDITPTSPIVTQNSTHIVTNTSAVAGNVNIQSPNLNIVKTDQEVTATTINPAGTDASGAVVSSGTHVCDLCGKMFPFRYQVIVHRRYHAERKPFTCQVCGKAFSCAAELTGHGKCHLGGSMYTCAICFHVFANAASLERHMKRHSTDKPYACTICGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTLCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTNESPHRCGYCSKSFTRKEHLVNHVRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCTYCTKSFTRKEHLTNHVRQHTGESPHRCQYCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLINHMRSHTGERPFACTECGKSFPLKGNLLFHQRSHNKGANAERPFRCDLCPKDFMCKGHLVSHRRSHSGEKPHACPDCGKTFVEKGNMLRHMRKHNTDAANSTTNTAVTTIAAVAANTVVTNVTTQVQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQNAQTNQNTTSLQIPQVTQSQQTLAAQVAAANQGGVISQTVPTVGHMQIHQQGNRPVVVPTPNGNVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-