Nfla008863.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986041.1:113010433-113013550[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.9e-05 0.0015 19.5 2.1 1 20 283 302 283 305 0.94 2 13 1.3e-05 0.00048 21.0 2.7 1 23 311 333 311 333 0.98 3 13 9.8e-07 3.7e-05 24.5 2.8 1 23 339 361 339 361 0.98 4 13 4.4e-05 0.0016 19.3 1.2 1 23 367 389 367 389 0.96 5 13 9.2e-06 0.00034 21.4 1.6 1 23 395 417 395 417 0.97 6 13 9.9e-07 3.7e-05 24.5 2.0 1 23 423 445 423 445 0.98 7 13 1.7e-06 6.2e-05 23.8 0.9 1 23 451 473 451 473 0.98 8 13 0.00011 0.004 18.1 0.5 1 23 479 501 479 501 0.94 9 13 8e-06 0.0003 21.6 0.5 1 23 508 530 508 530 0.98 10 13 3.1e-07 1.1e-05 26.1 0.8 1 23 536 558 536 558 0.98 11 13 4.8e-05 0.0018 19.2 5.7 1 23 564 586 564 586 0.98 12 13 2.4e-05 0.00089 20.1 8.2 1 23 592 614 592 614 0.99 13 13 1.5e-05 0.00055 20.8 2.4 1 23 620 642 620 642 0.98
Sequence Information
- Coding Sequence
- atgACTTCTTCTAAGTATAGCTACTACCGTTGCTGTATCGTGCGTGAATGTAAAAATACATCTATAAAAACACCGGAAAAGTTATGGATTAAAGTGCCCCGGGAAATTAATATGCGAAATACTTGGTTAAAACTTGCAAGAAGAGATCCTTCAAAATTATCAAGCGTATCtcatttgtatttttgtgaagATCATTTCGATTTAGAAaataatatggaaaattatATGCGGTATAAAATAATGGACTCAGTTAAAAGGATTCAAATGAAACCAGACTGCACACCATCCAGATTCGATTGCCAGTCTGATAAGAAACTCGAGTTCACGGCAAGTGAACCTCAGCTTGACTCTAAGACAAGCCAACAGTTGTCAATACTTTCAAAGATCAAAGAAACCTGTCATCTTGAACCGGCAATGTCATCTTCATGCAATCAAGggTCAGGTGCTAAATTGCGACGGTTAAAAAATATTGCTGTTCCTTCTTTGTTTCTACCTGAACCTAATTCTGCTCAGATGATTGTTAGATCAGATTTGAAATCTATTCAACTGAATGTTGACCCCGAAAAGTTTGTTAATTCTTGTGAATTAATTGATTCGCCTCATGATGtacaaaattgtttgtttatcgatgaagaaaacattaaaaaagaACAATTATATTCTGAAATAATAGTTAAagaagaaatagaagaaaatgttTCGATAGAACATGAATCGGTGTTTATTAAATGTGAAAATCCTGAACAACAGTTctttacagaaataaaaaatgaattagacGAAAGTTTTTCGGATGAACATGAAGATacacaaaactattcagttcgtaccgaagaaaaatttttattcacatgtactttttgctataaaacatttactagtcaaaacaatttaaataaacatataccaATTCATTTTGGAGAAAAGCTTTtctcatgtgatgattgtgaaaaaacatttactaatcAAATTTGTTTagctcgacataaacgaattcacacgggagaaaaacttttttcatgtgATTTCTGTGAGAAAACATTCACCCAACAAAGTACTTTAGTTCGACATACACGAACtcatacgggagaaaaaccattttcatgtgatatttgtaataaaaaatttacacaaaaaaccggtttaatTCAGCATAACTTAAGTCATACTGGAgagaaaccattttcatgtgatgtgtgtaataaaacttataccacgcaaagtaatttatatgtacataaacaattgcatacgggggaaaaacctttttcatgtgacaTTTGTAATAAAAGATTTTCTCAACAGAGCAATTTATATGTACATAAACGATTGCATACTAGCGTCAAACGTTTTTCATGTGaggtttgtgataaaaaatttgctcAACAAAGCAATTTAGATACACACAAACGTATTCATACCGGAGAAAAATCATTtgtatgtgatatttgtgataagaAATTTTCTTTCCAAAGTGTTTTGTTGAAACATAAAGCAGGTCATACTGTCGGAGGAAAACCATTTACATGTGCTGTCTGTGAGAAATCATTTACAACGCAAATTGCTTTAACTATACATAAACGTATGCATACTGGTGAACAACTTTTTCCATGTGATGTGTGTGGTAAAATATTTACGTTTCAAAGTAATTTAAGaacacataaacgaattcatgaTGATATCAAAAGTtattcatgtgatttttgtgataaaGAATTTTCCCAGCATCataatttaattgaacataGACGAAAGCATACGGGTGAAAAACCGTACACATGTAATATTTGTCATAAAACATTTAGCAaacaatgtaatttaaaaacgcataaacgaattcatactggtgaAAAACCTTTTgagtgtgatgtttgtaataaaaaatttaccaatcGAAGAAATTTACTTgaacataaacaaaaacattga
- Protein Sequence
- MTSSKYSYYRCCIVRECKNTSIKTPEKLWIKVPREINMRNTWLKLARRDPSKLSSVSHLYFCEDHFDLENNMENYMRYKIMDSVKRIQMKPDCTPSRFDCQSDKKLEFTASEPQLDSKTSQQLSILSKIKETCHLEPAMSSSCNQGSGAKLRRLKNIAVPSLFLPEPNSAQMIVRSDLKSIQLNVDPEKFVNSCELIDSPHDVQNCLFIDEENIKKEQLYSEIIVKEEIEENVSIEHESVFIKCENPEQQFFTEIKNELDESFSDEHEDTQNYSVRTEEKFLFTCTFCYKTFTSQNNLNKHIPIHFGEKLFSCDDCEKTFTNQICLARHKRIHTGEKLFSCDFCEKTFTQQSTLVRHTRTHTGEKPFSCDICNKKFTQKTGLIQHNLSHTGEKPFSCDVCNKTYTTQSNLYVHKQLHTGEKPFSCDICNKRFSQQSNLYVHKRLHTSVKRFSCEVCDKKFAQQSNLDTHKRIHTGEKSFVCDICDKKFSFQSVLLKHKAGHTVGGKPFTCAVCEKSFTTQIALTIHKRMHTGEQLFPCDVCGKIFTFQSNLRTHKRIHDDIKSYSCDFCDKEFSQHHNLIEHRRKHTGEKPYTCNICHKTFSKQCNLKTHKRIHTGEKPFECDVCNKKFTNRRNLLEHKQKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -