Basic Information

Insect: Nineta flava
Gene Symbol: -
Assembly: GCA_963920215.1
Location: OY986045.1:67817640-67819139[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.26 9.6 7.4 5.6 1 23 55 77 55 77 0.95

2 16 0.00026 0.0097 16.9 0.1 2 23 84 105 83 105 0.96

3 16 0.013 0.48 11.5 0.9 1 23 110 132 110 132 0.95

4 16 2.3e-05 0.00086 20.2 3.1 1 23 132 154 132 154 0.98

5 16 6.9e-05 0.0026 18.7 2.4 3 23 161 181 159 181 0.95

6 16 5.2e-06 0.00019 22.2 0.9 1 23 187 209 187 209 0.96

7 16 0.063 2.4 9.4 2.0 1 21 214 234 214 236 0.93

8 16 2.9e-05 0.0011 19.9 0.8 1 23 242 264 242 264 0.97

9 16 1e-06 3.8e-05 24.4 2.8 1 23 270 292 270 292 0.98

10 16 0.00022 0.0083 17.1 0.4 1 23 297 319 297 319 0.97

11 16 7e-06 0.00026 21.8 2.0 1 23 325 347 325 347 0.98

12 16 1.4e-05 0.00054 20.8 0.5 1 23 362 384 362 384 0.98

13 16 0.00012 0.0044 18.0 0.8 1 23 390 412 390 412 0.98

14 16 2.8e-05 0.0011 19.9 0.2 1 23 418 440 418 440 0.97

15 16 5.4e-07 2e-05 25.3 1.0 1 23 446 468 446 468 0.98

16 16 1.5e-05 0.00056 20.7 0.6 1 23 474 497 474 497 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.26	9.6	7.4	5.6	1	23	55	77	55	77	0.95
2	16	0.00026	0.0097	16.9	0.1	2	23	84	105	83	105	0.96
3	16	0.013	0.48	11.5	0.9	1	23	110	132	110	132	0.95
4	16	2.3e-05	0.00086	20.2	3.1	1	23	132	154	132	154	0.98
5	16	6.9e-05	0.0026	18.7	2.4	3	23	161	181	159	181	0.95
6	16	5.2e-06	0.00019	22.2	0.9	1	23	187	209	187	209	0.96
7	16	0.063	2.4	9.4	2.0	1	21	214	234	214	236	0.93
8	16	2.9e-05	0.0011	19.9	0.8	1	23	242	264	242	264	0.97
9	16	1e-06	3.8e-05	24.4	2.8	1	23	270	292	270	292	0.98
10	16	0.00022	0.0083	17.1	0.4	1	23	297	319	297	319	0.97
11	16	7e-06	0.00026	21.8	2.0	1	23	325	347	325	347	0.98
12	16	1.4e-05	0.00054	20.8	0.5	1	23	362	384	362	384	0.98
13	16	0.00012	0.0044	18.0	0.8	1	23	390	412	390	412	0.98
14	16	2.8e-05	0.0011	19.9	0.2	1	23	418	440	418	440	0.97
15	16	5.4e-07	2e-05	25.3	1.0	1	23	446	468	446	468	0.98
16	16	1.5e-05	0.00056	20.7	0.6	1	23	474	497	474	497	0.96

Sequence Information

Coding Sequence: ATGGACCacaaattgaaaacaaatgatTCATTTCATGACGAAAATAATCTTATGTTAATTAATGAAGAACACATTAAACTTGAACAAGAACTACACACCGAATTAATAATCAAAGACGAAACACCAGATGAAAACCAAATTCAAATCGGAGAAAAGCCAAGATTTCCATGTGATTGTTGTCATAAAACATTTAGCACGCAAAGAattttaactcaacataaacaaattcattCCGGTGAAAAAcgaattgtatgtaatatttgtgataaatcatttaCAGCTGAACCAAGTTTAGTtaaacataaactaattcatttaagaaaacaatattcaTGTGACCATTGTCCTAGAACATTTCTCAGGGAAGATCTATTGGTTCTGCATAAATCGCAACATACATGTGATATCTGTAATCGAATATTTACCTATCGAAGCCATTTAGTCGATCACAAACGAATTCATACcggagaaaaaataaattgtggtGTATGCGGAAAATCATTTAGTCGGGAAAGTAGTTATTTTCACCATAAAAAACTTCATTCTAaagatatttcattttcatgtgatatttgtgaaaaAACATTTGCCAATAAACGCAATTTACTGAGACATAAATTAGGCCATGATAAAAAACGGTTTGCATGTGACAATTGTGAGGAAACATTTCCCACGGAAAAGcgtttaaatatacataaacgATGTCATTTGCCAGGAAAACCGTTTCCATGTGATATGTGCAATAAATCATATAACCAGAAAAGTACTTTAATTGACCATAAAGAATCTCATTCTGGAGATAAACGATTTTCATGTGatctttgtgataaaacatttacacaaAGATCCTATTTACGGAGACATAAATTAATGCATGGTGGCAAACTTTttgcatgtgatatttgtgataaaacatttccaACGACAAAACGTTTAGCTATACATAAACAGAGTCATTCAGGAGAAAAACAGTTTACATGTGATGTGTGCCAAAAATCATTTACCACGAAAATCACTTTACGTATTCATAAACGACTTCATTCAAATGAAAAACCGATTAAAAAACCGAAAGAGAAAAAACGTttctcatgtgatatttgtgatacaaaatttgcggataaatatactttagttaTACATAAACGAGTTCATACGGGTGAAAAACcgtattcatgtgatgtttgtgataaaaaatttactcaatCAAACATTTTAAATGTACATAAACGGATTCATACCGGAGAGCGACCATTTGCATGTGATGTCTGTGATCGAGCATTTACCatcaaaaatgatttaattcggcataaacgaattcataccggCGAAAGACcgtattcatgtgatgtttgtcgTAAAACGTTTATCcagaaaagtaatttaaatgaacatttgaaaattcattttggaGAGGAACCGTTtgcatgtgatgattgtgatgaAACATTTAGTAACCGGAAAAAATTAGTAATGCATCAgaaaattaatcataaaaattaa
Protein Sequence: MDHKLKTNDSFHDENNLMLINEEHIKLEQELHTELIIKDETPDENQIQIGEKPRFPCDCCHKTFSTQRILTQHKQIHSGEKRIVCNICDKSFTAEPSLVKHKLIHLRKQYSCDHCPRTFLREDLLVLHKSQHTCDICNRIFTYRSHLVDHKRIHTGEKINCGVCGKSFSRESSYFHHKKLHSKDISFSCDICEKTFANKRNLLRHKLGHDKKRFACDNCEETFPTEKRLNIHKRCHLPGKPFPCDMCNKSYNQKSTLIDHKESHSGDKRFSCDLCDKTFTQRSYLRRHKLMHGGKLFACDICDKTFPTTKRLAIHKQSHSGEKQFTCDVCQKSFTTKITLRIHKRLHSNEKPIKKPKEKKRFSCDICDTKFADKYTLVIHKRVHTGEKPYSCDVCDKKFTQSNILNVHKRIHTGERPFACDVCDRAFTIKNDLIRHKRIHTGERPYSCDVCRKTFIQKSNLNEHLKIHFGEEPFACDDCDETFSNRKKLVMHQKINHKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -