Nfla005697.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986040.1:146457145-146458863[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.4e-06 0.00013 22.8 1.2 1 23 135 157 135 157 0.97 2 13 1.8e-06 6.9e-05 23.6 0.5 1 23 163 185 163 185 0.97 3 13 0.00014 0.0052 17.7 0.7 1 23 191 215 191 215 0.92 4 13 6.5e-05 0.0024 18.8 4.0 1 23 216 238 216 238 0.98 5 13 0.019 0.72 11.0 4.3 1 23 299 322 299 322 0.97 6 13 5.5e-07 2.1e-05 25.3 0.7 1 23 352 374 352 374 0.97 7 13 3.8e-05 0.0014 19.5 0.4 1 23 380 402 380 402 0.98 8 13 9.8e-08 3.6e-06 27.6 1.2 1 23 408 430 408 430 0.98 9 13 2.1e-07 8e-06 26.6 0.8 1 23 436 458 436 458 0.98 10 13 2.4e-06 9e-05 23.3 0.3 1 23 464 486 464 486 0.98 11 13 5.6e-05 0.0021 19.0 0.9 1 23 492 514 492 514 0.98 12 13 9.1e-07 3.4e-05 24.6 0.3 1 23 520 542 520 542 0.98 13 13 1.4e-05 0.00052 20.9 2.0 1 23 548 570 548 570 0.98
Sequence Information
- Coding Sequence
- atgtcgaATTATTTATTCCAAGATGTAAATGATCCTTTACTAATCAAACAGGAACCTATCGAATCTGAACAACAATTACAAACAGAATTAATAATTCAAGAAGTAAAGGTGAAAACTGAAGATCAACAACCTGCAGAAGTCATCATCaaacaagaaaatataaaaactgaaccagaaTTACAttcagaaataataattaaagaagaaatcGGTCCAATCGGACAAGAACAAATAGTTATCGAAGAAAAACATTGTTTATGGGATGCTGATGCTGGGGATACAACGTTTAATACACAGAGCGATTTGGTTCAACGAACTCATTCTGAAGAAAAATGTTATCCAAGTGATGGTTCTTTTTCACCTTCTTATTTAGTTGCAGACAATCGAAATGTAGAAAAACTTTttgcatgtgatgtttgtgataaaaaatttacacgtAAACCAActttaactcgacataaacaAATTCACATTGGACAATCACCATttgcatgtgatgtttgtaacaaaatatttatacagaaaTCGGATTTAGTTAAACATACACGAAGtcacacgggagaaaaacctttttcttgtgatgtttgtACCCAAACATTTACCCTGGAAAGTAATTTAGTTCGACATAAAcgaaaagttgttcatttctCGTGTGATGAATGTGATCAAATATTTTCCCATAAACGCCATTTGATTCtgcataaacgaattcattctGACGAAAACACTTTTACGCGTGatctttgtgataaaaaatataatcggCTAGATAATGGAGGGAAAAGTTTCTTAAGTAATAATTCTTCGACTATTTCTTTAGTTGTGGATAATCGTAGTGTTGATGTGGAAAATCGTTTGTCTTGTGATACACTAATTCACACTgaagaaaatcatttttcttgTGACCATTGTGATGAAAAGTTGAATCGTCACGAAAGTTTAGatcaacataaacgaatgcaACATACTGACGAAAAACATTTGTCCAGTGATAATTGTTTTTCGTCTTCTTCTTTAGTCACAGAAAATCGAAATGCAGATGTAGAAAAGCTTTTCGCATgcgatgtttgtaataaatcatttacGGTAAGAAGTAATTTAGCtagacataaacgaattcacactggagaacgACCATTTTCGTGTGATTTTTGTGCCAAAGCATTTATACAAAAAGCGGATTTAGTTAAACATAGacgaattcacactggagaaaaaccgttTTCTTGTGATGtctgtgataaaacatttaatcgttCGGGTAATTTAAACGAACATAGACGaactcacactggagaaaaaccgttctcgtgtgatgtttgtaataaaatatttagtcgtCAAGACAATTTAAACGATCATAGACGCATTCATAATCGGAAAAAACctttttcgtgtgatgtttgtgatgaAACGTTTACTGAAAAAGGTAATTTAGTTAAGCATACACGAATTCATACGGGAGAAAAACTTttctcatgtgatgtttgtgataaaacatatcTCAACAGTAGTGGTTTGATTCGACATAAACGTACtcatacgggagaaaaacctttttcatgtgatgtttgtgacaaaaaatttattgataaagcggatttaattaaacatacaCGAATTCATACCGGAGAGAAACCATTctcttgtgatgtttgtgataaaacatttaatcgtcGAGACAGATTAACTATTCATAAACGAAATCACATCGAATAA
- Protein Sequence
- MSNYLFQDVNDPLLIKQEPIESEQQLQTELIIQEVKVKTEDQQPAEVIIKQENIKTEPELHSEIIIKEEIGPIGQEQIVIEEKHCLWDADAGDTTFNTQSDLVQRTHSEEKCYPSDGSFSPSYLVADNRNVEKLFACDVCDKKFTRKPTLTRHKQIHIGQSPFACDVCNKIFIQKSDLVKHTRSHTGEKPFSCDVCTQTFTLESNLVRHKRKVVHFSCDECDQIFSHKRHLILHKRIHSDENTFTRDLCDKKYNRLDNGGKSFLSNNSSTISLVVDNRSVDVENRLSCDTLIHTEENHFSCDHCDEKLNRHESLDQHKRMQHTDEKHLSSDNCFSSSSLVTENRNADVEKLFACDVCNKSFTVRSNLARHKRIHTGERPFSCDFCAKAFIQKADLVKHRRIHTGEKPFSCDVCDKTFNRSGNLNEHRRTHTGEKPFSCDVCNKIFSRQDNLNDHRRIHNRKKPFSCDVCDETFTEKGNLVKHTRIHTGEKLFSCDVCDKTYLNSSGLIRHKRTHTGEKPFSCDVCDKKFIDKADLIKHTRIHTGEKPFSCDVCDKTFNRRDRLTIHKRNHIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -