Nfla006244.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986041.1:13988355-13990302[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.9e-05 0.00072 20.4 1.6 1 23 45 67 45 67 0.95 2 17 3.5e-05 0.0013 19.6 1.9 1 23 73 95 73 95 0.97 3 17 1.3e-05 0.00048 21.0 0.9 1 23 101 123 101 123 0.97 4 17 8e-07 3e-05 24.8 2.7 1 23 129 151 129 151 0.99 5 17 5.6e-07 2.1e-05 25.3 1.9 1 23 157 179 157 179 0.98 6 17 0.00014 0.0052 17.7 0.6 1 23 185 207 185 207 0.97 7 17 2.1e-05 0.00077 20.3 3.7 1 23 226 248 226 248 0.96 8 17 6.8e-05 0.0025 18.7 1.1 1 23 254 276 254 276 0.95 9 17 0.0062 0.23 12.5 0.1 5 23 301 319 300 319 0.93 10 17 1.7e-06 6.4e-05 23.7 1.7 1 23 325 347 325 347 0.98 11 17 0.00027 0.01 16.8 5.3 1 23 353 375 353 375 0.98 12 17 0.00029 0.011 16.7 0.1 1 23 381 403 381 403 0.97 13 17 5.6e-05 0.0021 19.0 0.3 1 23 495 517 495 517 0.98 14 17 2.6e-06 9.7e-05 23.2 3.9 1 23 523 545 523 545 0.97 15 17 0.069 2.6 9.2 1.7 1 23 551 573 551 573 0.92 16 17 0.41 15 6.8 0.2 7 23 586 603 582 603 0.88 17 17 0.7 26 6.1 0.2 1 12 608 619 608 621 0.90
Sequence Information
- Coding Sequence
- ATGTCAGATTCTTCATCAAATTCATTTGCTGATGAGAAAAATACTTTATTGACCCGAGATGGAAACATTGAACTACCATTACAAGCAGAAATgataattaaagaagaaattttAGTACCGGGAGagaaaccatttttatgtgatatttgtgGTAAAACTTTTGCTTTCAAAAGCAGTGTAACCAATCATAAACGAAAAcataccggagaaaaaccattcgcatgtaatgtttgtgacaaaacatttatgtATCCGAATCATTTAGTACAACATAAACGAATGCACACTGGTGAAAGACCTTTTGCATGTGATGTCTGTGGTAAAACATTCGCCCAGCAATGCAGTTTAGTTGATCATAAACggattcatactggagaaaaaccatataaATGTGATTTTTGTGGTAAAAGATTTACCGTTCAAAAcaatttaactaaacacaaacgaattcatactggaatcaaaccattttcatgtgatgtttgtgataaaacatttacgcaGAAAAGCACATTAGAAAATCACAAACGACTTCATACTGGACAAAAGCCATTCTCGTGTGATGTTTGCAATGAAAGATTTATTCAACGTATtagtttaactaaacataaactgGTCCATACTGGGGAAAAAGAAGCATATCGTGTACGTAAACGAATTCGTACTGAAAAACCATATCTATGTgatgtatgtaataaaaaatttagtacaGAAAATcatttaactaaacacaaacgaattcatactCGAATTAAACCttattcgtgtgatgtttgtaagaAAACATTTCCTCAACGTATTAGTTTAAATAAGCATAAATTGGATCATTCTTCAAAGAAGCAGGAAAGTGTTTTCGTTGATAAACAAATCAATAGTGAAGAGAAACCATTTTCTTGGGATATTTGTGGTAAAAAATTTACACTTCAAAGCAGTTTACTTGCGCATAAAggaattcacactggagaaaaatcatttatatgtGACGTGTGTAACAAAAGGTTtacttcaaaaaacaatttagttaAACACAAACGAATTCATTTTGGgatcaaaccattttcatgtcaTGTTTGTTTTAAAGCATTTACCCAAAAATGCACTCTAGATAATCATatacgaattcatactggacaAAAACCATATGCTTGTGACGTTTGTAATAAAGCATTTATTCAACGTATCGGTCTACTTAAACATAAGTTGATTCATACggaaataaaagaacaattagatgaagaaaataaacaagaaaGTGATTTGGTAGAAAGTTTTGTTGATGATTTCGTCGAAGAAGTGTATAGTGAAGAGGAACCTACAATTAATGACGATAcagtagaagaaaaaaaacaagatattgtttttattgaacaTAAACAAATCTGTAATGAAGAGAAACCACCTATAGTTCAAGAAGTATTAGAAAAACCTAAacaagaaaatgtttttgttgaaCATAAACCAATTTATGGTGAAGAAAAACCTTTTACTTgtaatatttgtgataaaaaatttactcttcTAGGCGGTTTGCTTGtgcataaacgaattcataatGCAGCAAAACGTTTtgcatgtgatgattgtgataaaacatttacccaaCAAACCAGTTTAATGCATCATAAACGAAAAcatacaggagaaaaaccatttttatgtgatatttgtgGCGAAAGTTTTGCTTACCAAATAAACCATTATAatcataaacaaaaacatatggaTGAATATGACAAAAGAACATATACTTGtgatgataaaacatttaccaaTCAGAATAGCTTAACCTATCATGGCAAACAAATCCatggtaaaaaatattttccatgtgaTGCTTGTGATAAAGTATTTACACAACTAACCGTCACACGAGTTTAG
- Protein Sequence
- MSDSSSNSFADEKNTLLTRDGNIELPLQAEMIIKEEILVPGEKPFLCDICGKTFAFKSSVTNHKRKHTGEKPFACNVCDKTFMYPNHLVQHKRMHTGERPFACDVCGKTFAQQCSLVDHKRIHTGEKPYKCDFCGKRFTVQNNLTKHKRIHTGIKPFSCDVCDKTFTQKSTLENHKRLHTGQKPFSCDVCNERFIQRISLTKHKLVHTGEKEAYRVRKRIRTEKPYLCDVCNKKFSTENHLTKHKRIHTRIKPYSCDVCKKTFPQRISLNKHKLDHSSKKQESVFVDKQINSEEKPFSWDICGKKFTLQSSLLAHKGIHTGEKSFICDVCNKRFTSKNNLVKHKRIHFGIKPFSCHVCFKAFTQKCTLDNHIRIHTGQKPYACDVCNKAFIQRIGLLKHKLIHTEIKEQLDEENKQESDLVESFVDDFVEEVYSEEEPTINDDTVEEKKQDIVFIEHKQICNEEKPPIVQEVLEKPKQENVFVEHKPIYGEEKPFTCNICDKKFTLLGGLLVHKRIHNAAKRFACDDCDKTFTQQTSLMHHKRKHTGEKPFLCDICGESFAYQINHYNHKQKHMDEYDKRTYTCDDKTFTNQNSLTYHGKQIHGKKYFPCDACDKVFTQLTVTRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -