Nfla013771.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986042.1:119134276-119140973[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0011 0.041 14.9 0.9 2 23 200 221 199 221 0.97 2 24 0.0014 0.052 14.6 1.7 3 23 231 251 229 251 0.96 3 24 0.00031 0.012 16.6 0.8 1 23 257 280 257 280 0.98 4 24 0.0018 0.066 14.2 0.0 2 23 287 309 286 309 0.96 5 24 0.00079 0.03 15.3 4.1 1 23 314 336 314 336 0.97 6 24 2.4 90 4.4 11.3 1 23 342 367 342 367 0.96 7 24 0.73 27 6.0 0.2 2 23 375 393 375 393 0.80 8 24 8.4e-05 0.0031 18.4 1.8 1 23 398 421 398 421 0.98 9 24 0.00017 0.0064 17.4 0.5 1 23 432 454 432 454 0.96 10 24 0.00027 0.01 16.8 1.7 1 23 460 483 460 483 0.97 11 24 1e-05 0.00038 21.3 3.2 1 23 489 511 489 511 0.99 12 24 6.2e-06 0.00023 22.0 0.3 1 21 517 537 517 538 0.96 13 24 0.0025 0.094 13.8 1.1 2 23 686 707 685 707 0.97 14 24 0.00073 0.027 15.5 2.0 2 23 716 737 715 737 0.97 15 24 0.00029 0.011 16.7 0.9 1 23 743 766 743 766 0.98 16 24 3.2 1.2e+02 4.0 0.0 2 23 772 794 771 794 0.94 17 24 3e-05 0.0011 19.8 1.9 1 20 799 818 799 821 0.94 18 24 0.12 4.5 8.5 10.4 1 23 827 850 827 850 0.97 19 24 1.1 40 5.5 0.2 3 23 859 876 858 876 0.77 20 24 0.00011 0.0041 18.0 2.7 1 23 881 904 881 904 0.98 21 24 0.0019 0.071 14.1 0.9 1 23 915 937 915 937 0.96 22 24 0.01 0.39 11.8 1.4 1 23 943 966 943 966 0.96 23 24 6.6e-05 0.0025 18.7 3.9 1 23 972 994 972 994 0.99 24 24 1.1e-05 0.0004 21.2 0.6 1 23 1000 1022 1000 1022 0.99
Sequence Information
- Coding Sequence
- ATGTTGAATAATTACATATCAAaatatgattttgataaaatatgtcgAACAtgtttgaaaacaaatgaaaatatgacATCGGTCTTTGATACAGAGGTTTTAAACATGTTGACAGCATGTACAACGATTTGTaTTGAATTAAACGATGGCCTACCAACACAAATCTGTACAATGTGTTCAAGTAAAATTCAAGAATCGTTTAGTTTTCGACAAGAAAGTGAAAATTGTGATCGAATCTTACGACAAGTGTTACTACAGGATTATAATGATCAAATAATGACCattaaatgtgaacaaaaaacTGAATTAAATTGTCATGATGATAATGTTAAAGAtgaacctgttgacgatcattatCTGGATGATGATGGACGTCGTGACGGACATGCAGAGTCTGCTGATTCAAACGATCCAAATACAGACGATTCaaatactgatgatgatgatgataatgatgataaaaatgatttcaaatcAGATGATGATTTAGAATTTCCACCAATACATGTTGTCGATACAGatcgtacaaataaaaaagattcaGCATGGCAAAAAGCATTACAACTGGGTGCAGATAAATGTGACCCCACAACGAAAACATGTAAAATATGTGGTAAAGTCCTGTACAACGTGCATTCGTTGGTCCGGCATGTGGAAACTCACGATGAGAATCGTAAATATGCAATTATATGTACGATTTGTAATAAGGGATTCTATGAGaaacaacatattaaaaatcatatgtTACGGCATAAAGGTGCTGCAAGataTAAATGTGATGATtgtaaaaaaccattttatgaactaaaTGCGTTGCGTGTTCATGTGAAACGTAAACATGGGACAGCACGCAAACTGGAATGTGGACAATGTGACGAAGTGTTTATATTGGAACAAGATCTAGAAATACATCAACGGACCGCACACGAATGTCAACAATATGAATGTAAACAGTGTGGCAAAACATTTCATTATCGTTATCGATTACGTGAACATCAGGTGATGCACTCCAAGGAGCGCACGTTCCATTGCACCAGCACGGATTGTCACAAATCGTTCAAAAGCAAACAAGTGTTGCATCTGCATTACAAGCGATGCCATTCGGGTCAGAAGAAACGTGAAGTTTGTAATGTTTGTGGCAAATctgttattaatttaaaaAATCATATTTACATCCACAacgatgaaaaatataaatgtgaacaaTGTGAACAAGAATTTACGAACAAGTATGTATTAGAGAAACATATAAAACGTAAACATGGCAATCTGGATGACACCGAACTGAATCCATACTTGTGCAGTATTTGTGGCAAACGGAGCGAGAACATGGCAAATCTAAATCGACATTATCTAACGCATTCCGATGTTAAAACATACAAATGTCCGATCTGTACGAAACTATTCAAAACGAATGATCTGCGGAACAGTCACATCCGGTACACGCACAACAATGAACGGCACTTTAAATGTACAGAGTGTTCGAAGAGCTTTCAAACACGATCGGTCCTGAAGAAGCATGTACGTACACATACGGGGGAGCGACCGTACGAATGTGAGTTGTGTGGCAAAGCGTTTCAACAGCGCAGCACGTTGAAGACACACATGAAGATTGAATTGAACGATGGTCTTCCAAATCGAGTATGTACAGTGTGTTCAAGTAAATTAAGTGAATCGTACAGTTTTAAACAACAGTGTCTAAAATCtgatgaaattttaaaacaagtacAAAACACTGATACTGATCCATTATCTGATGAAAACGATGCAAATGATGCTGATGATGATTTTAAGTATGAAGCAGGAGCAGAAAATGAACAACAACTTGTTGAAGataaaatagatataaataatgatgaAGTGCAACAAATGAACAATGAAACGGTGCTGCGTACCACCACCATTGAAACAATAACTGTTGAACAGACATTGCAACAACAAGAAGCTTATTTTTATCCAACGGAATTAACATCTGATGGCGAAGTACAACAAAAAGAATCAGCGTGGGAGCGTGCTGTACAACTGGGTGCAGATAAATGTGACCCCACAACAAAAACATGTAAAATATGTGATAAAGTCCTGTACAACGTGCATTCGTTGGTCCGGCATGTGGAAACTCATAATAAAAATCGTAAATTTGAAATTGTGTGTACGATTTGTAATAAGGGATTCTATGAGaagaaacatattaaaaatcatatgtTACGGCATAAAGGTGAAGCACGTTTCAAATGTGATGATTGTAAAAAACCATTCTATGAATTGAATGCATTACGTGCGCACGTTAAGAAGAAACATCCGCAGAAGAGTATCGAATGTGCGCAGTGTGACGACGTGTTTGTCCTGGACCAGGATCTAGAACTGCATCAACGAGCCACACACCAACAGCTGCAATACTATTGTTCCGATTGTGGCAAACCGTTTGTGCATCGCTATCTGCTGCGTAAACATCAATGGATGCACGCGAAACAACGGATGTTCCATTGTAAGCAGTGCGACAAGTCCTTCAAGAGCAAACAAGTGTTGCATCTGCACTACAAACGGTGTCACACCGGTGACAAGAAACGggaaatttgtaatatttgtggCAAAtctgttgtttatttaaaaaatcatatttacattcataaaaatgagaaatacaaatgtGAACAATGTGAACAAGAATTTACGAACAAATACTCATTGGATAAACATCTGAAACGTAAACATGGCAATCTGGATGACACCGAACTGAATCCATACTTGTGCAGTGTTTGTGGCAAACGGAGCGAGAACATGACCATGTTGAAACGACATCTGACCACACATTCGGATGTTAAGACGCACAAATGTCCGATCTGTACGAAACTGTTCAAAAGTGTGGAGCTGGTGAACTCACATGTCCGTTACACGCACAACAATGTACGCAACTTTAAGTGTAGCGAATGTTCGAAGAGCTTCCATACAACATCCGGTCTCAAGTTACATGTGCGAACACATACGGGGGAGCGACCGTACGAGTGTGAGGTGTGTGCCAAAGCGTTTCAACAGCGCAGCACGTTGAAGACACACATGAAGGTGCATGGGTTGTCGTCGGTCTATCGGAATAATAAGGTGGAGGAAGAACAGCAGAAGCAACAACAGAAatcgtttaaaattaaattggaaccattatttattcaataa
- Protein Sequence
- MLNNYISKYDFDKICRTCLKTNENMTSVFDTEVLNMLTACTTICIELNDGLPTQICTMCSSKIQESFSFRQESENCDRILRQVLLQDYNDQIMTIKCEQKTELNCHDDNVKDEPVDDHYLDDDGRRDGHAESADSNDPNTDDSNTDDDDDNDDKNDFKSDDDLEFPPIHVVDTDRTNKKDSAWQKALQLGADKCDPTTKTCKICGKVLYNVHSLVRHVETHDENRKYAIICTICNKGFYEKQHIKNHMLRHKGAARYKCDDCKKPFYELNALRVHVKRKHGTARKLECGQCDEVFILEQDLEIHQRTAHECQQYECKQCGKTFHYRYRLREHQVMHSKERTFHCTSTDCHKSFKSKQVLHLHYKRCHSGQKKREVCNVCGKSVINLKNHIYIHNDEKYKCEQCEQEFTNKYVLEKHIKRKHGNLDDTELNPYLCSICGKRSENMANLNRHYLTHSDVKTYKCPICTKLFKTNDLRNSHIRYTHNNERHFKCTECSKSFQTRSVLKKHVRTHTGERPYECELCGKAFQQRSTLKTHMKIELNDGLPNRVCTVCSSKLSESYSFKQQCLKSDEILKQVQNTDTDPLSDENDANDADDDFKYEAGAENEQQLVEDKIDINNDEVQQMNNETVLRTTTIETITVEQTLQQQEAYFYPTELTSDGEVQQKESAWERAVQLGADKCDPTTKTCKICDKVLYNVHSLVRHVETHNKNRKFEIVCTICNKGFYEKKHIKNHMLRHKGEARFKCDDCKKPFYELNALRAHVKKKHPQKSIECAQCDDVFVLDQDLELHQRATHQQLQYYCSDCGKPFVHRYLLRKHQWMHAKQRMFHCKQCDKSFKSKQVLHLHYKRCHTGDKKREICNICGKSVVYLKNHIYIHKNEKYKCEQCEQEFTNKYSLDKHLKRKHGNLDDTELNPYLCSVCGKRSENMTMLKRHLTTHSDVKTHKCPICTKLFKSVELVNSHVRYTHNNVRNFKCSECSKSFHTTSGLKLHVRTHTGERPYECEVCAKAFQQRSTLKTHMKVHGLSSVYRNNKVEEEQQKQQQKSFKIKLEPLFIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -