Basic Information

Insect: Nineta flava
Gene Symbol: -
Assembly: GCA_963920215.1
Location: OY986041.1:126649204-126656452[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.82 30 5.9 1.0 8 23 24 39 23 39 0.94

2 14 5.9e-06 0.00022 22.0 0.4 3 23 128 148 126 148 0.98

3 14 5.3e-06 0.0002 22.2 6.1 1 23 154 176 154 176 0.98

4 14 4.8e-05 0.0018 19.2 1.8 1 23 182 204 182 204 0.98

5 14 4.9e-06 0.00018 22.3 0.8 2 23 271 292 270 292 0.96

6 14 2.7e-06 0.0001 23.1 1.0 1 23 298 320 298 320 0.98

7 14 2.4e-05 0.0009 20.1 1.3 1 23 409 431 409 431 0.98

8 14 8.4e-07 3.1e-05 24.7 2.7 2 23 438 459 437 459 0.96

9 14 8.8e-07 3.3e-05 24.6 3.5 1 23 465 487 465 487 0.98

10 14 1.5e-07 5.6e-06 27.0 1.6 1 23 493 515 493 515 0.98

11 14 1.1e-05 0.00041 21.2 0.6 1 23 594 616 594 616 0.98

12 14 1.9e-06 7.1e-05 23.6 0.7 1 23 622 644 622 644 0.95

13 14 8.3e-05 0.0031 18.4 8.8 1 23 650 672 650 672 0.98

14 14 1.5e-06 5.4e-05 24.0 3.5 1 23 678 700 678 700 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.82	30	5.9	1.0	8	23	24	39	23	39	0.94
2	14	5.9e-06	0.00022	22.0	0.4	3	23	128	148	126	148	0.98
3	14	5.3e-06	0.0002	22.2	6.1	1	23	154	176	154	176	0.98
4	14	4.8e-05	0.0018	19.2	1.8	1	23	182	204	182	204	0.98
5	14	4.9e-06	0.00018	22.3	0.8	2	23	271	292	270	292	0.96
6	14	2.7e-06	0.0001	23.1	1.0	1	23	298	320	298	320	0.98
7	14	2.4e-05	0.0009	20.1	1.3	1	23	409	431	409	431	0.98
8	14	8.4e-07	3.1e-05	24.7	2.7	2	23	438	459	437	459	0.96
9	14	8.8e-07	3.3e-05	24.6	3.5	1	23	465	487	465	487	0.98
10	14	1.5e-07	5.6e-06	27.0	1.6	1	23	493	515	493	515	0.98
11	14	1.1e-05	0.00041	21.2	0.6	1	23	594	616	594	616	0.98
12	14	1.9e-06	7.1e-05	23.6	0.7	1	23	622	644	622	644	0.95
13	14	8.3e-05	0.0031	18.4	8.8	1	23	650	672	650	672	0.98
14	14	1.5e-06	5.4e-05	24.0	3.5	1	23	678	700	678	700	0.98

Sequence Information

Coding Sequence: ATGTCAGCAATAAAGAGGACTAATCCCATCGCAGCACACATGTCATTACCGGGCTTCATAATAGATAAGGAGACATTTTCTCGTCGAAGTGTTTTAAAAACACATAAACTAACTCATGATGAAGTAGAACCTTTTTCATGCGGTTTTGATTCTCTTTATACTGAAAATAATGCCAAAGCTACCAGCACAGTTGGAGACGTTTTAGCTGAACAACAGTCATGTACAGAAATGCTATTTCAAGATGACATTATAAAAACAGAGACACAAATAATACCAGAGGCTATGCTTAAAACAGAAATggaagaagaaaatttttcaattgatcATAAACAAAACAGCCCTAAACACAAACAAATTCTTACGGGTGAACAACCTTTTTGGTGTGATGTTTGCGGTAAAATGTTTACccggaaaataaatttaattgatcataaacgaattcataccggagaaaaaccatttccatgtcatgtttgtgataaaacatttagaaatcgaaattatttacataaacaccaacgaattcatactggcgAAAAACGTttctcatgtgatgtttgtgatagcAGGTTTTCCCAGCGAAGCAGTTTAAGTAGACATAAACTAACTCATACGAGAGGAAAATCTTTTTCATTGAATTCATCTTGTATTGAAAAGAATACTATATTCGTAAAAGTGGAAGAGATTGACACTGAGCAGCAGTCATGTACAGAATTTGTATTTCAAAACGAAGATAAACAGACAAACCCTCAAATACAAACTGGAGATAAACGGATTAATGACTCACTtttgattgataataatatattgtcatgtgatatttgcaataaaaaatttacctctcAAAGTTATTTGGTgatacataaacgaattcatacgggGGAGAAACCTTTtgaatgtgatgtttgtaataaaacattttcgcGTCAAGATGTTTTAAATAcgcataaacgaattcataaaggagaaaaaagttttgcatgtgatCGAACTCATACTGAAGAACAACCTTTATCATGGGATCTTGATAAGAATTGTCATCAGATCAAAGTTGACAACATTGAAGCTGAGCAACAGTTATGTACAGAAGTTGCAATTCAAGACGAAGATATAGATACAAATGAACCTGAAATACAAATCCTACCAGAAGTAATGATGCAAACAGAAATGATCGAAGAGAATGTATCATTTGAATATATTCAAAACAGTATCGGAGATAAGTATTTCACATGTGATATCTGTTTTAAAACATCGACTACACAAGGGAATTTAGTTAAACACAAACGAATTCATTCGGGAGAACGACCTTGTTCGTGTAACATTTGTGGAAAATCATTTACCCAGAAGAGCAGTTTAAATGTACATAATCGAATTCATACGGGAGAAAAGCCATTtccatgtgacgtttgtgataaaacttttagaaatcgacataatttaaatttacacaAACGAACCCAttctggagaaaaaccttattcatgtgatgtttgtgataaaagtttTACCCAGCGAAGCAGTTTAAATAAACATAGACAAATTCATATTGGAGAAATACCTTTTTCATTCGATTTTGATGCACATTATATAGAAAATGGTACTGTTTTCGTCAAAATAGAAAACGTGGAAGCGGAGCAACAATCATATACAGAAATGGAATTTCAAGATGAAGATATAGAAACAGAACCACAAATTCTGCCAGAGGTTATGATTAAAACAGAAATGAAAGAAGAAATTGTATTGATTGATCATGAACAAAACAGTACTGGAGGAAAGTCTTTTCcatgtgatatttgttttaaaacatcGACTACACAAGGAAATTTAGCTAAACATAGACGAATtcatacgggagaaaaaccatttttgtgtgatgtttgtgataaaacatttacccaaaaaagtAGTTTAGTgatacataaacgaattcatactggagaaatgccatttccatgtgatgtttgtgataaaaccttTAGACATCGCCATCACTTACATTTACATCAACGAATTCATTCTGGAGAGAAACCTTTCCCATGTAATGTTTGCCATAAAAGATTCACTCAAAAAAGTAGTTTAACtgtacataaacgaattcatacctGA
Protein Sequence: MSAIKRTNPIAAHMSLPGFIIDKETFSRRSVLKTHKLTHDEVEPFSCGFDSLYTENNAKATSTVGDVLAEQQSCTEMLFQDDIIKTETQIIPEAMLKTEMEEENFSIDHKQNSPKHKQILTGEQPFWCDVCGKMFTRKINLIDHKRIHTGEKPFPCHVCDKTFRNRNYLHKHQRIHTGEKRFSCDVCDSRFSQRSSLSRHKLTHTRGKSFSLNSSCIEKNTIFVKVEEIDTEQQSCTEFVFQNEDKQTNPQIQTGDKRINDSLLIDNNILSCDICNKKFTSQSYLVIHKRIHTGEKPFECDVCNKTFSRQDVLNTHKRIHKGEKSFACDRTHTEEQPLSWDLDKNCHQIKVDNIEAEQQLCTEVAIQDEDIDTNEPEIQILPEVMMQTEMIEENVSFEYIQNSIGDKYFTCDICFKTSTTQGNLVKHKRIHSGERPCSCNICGKSFTQKSSLNVHNRIHTGEKPFPCDVCDKTFRNRHNLNLHKRTHSGEKPYSCDVCDKSFTQRSSLNKHRQIHIGEIPFSFDFDAHYIENGTVFVKIENVEAEQQSYTEMEFQDEDIETEPQILPEVMIKTEMKEEIVLIDHEQNSTGGKSFPCDICFKTSTTQGNLAKHRRIHTGEKPFLCDVCDKTFTQKSSLVIHKRIHTGEMPFPCDVCDKTFRHRHHLHLHQRIHSGEKPFPCNVCHKRFTQKSSLTVHKRIHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -