Nfla005626.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986040.1:144327089-144328825[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1e-05 0.00039 21.3 3.0 1 23 86 109 86 109 0.97 2 15 1.3e-07 4.8e-06 27.3 1.4 1 23 115 137 115 137 0.98 3 15 8.6e-07 3.2e-05 24.7 0.5 1 23 208 230 208 230 0.97 4 15 9.4e-07 3.5e-05 24.6 1.6 1 23 236 258 236 258 0.98 5 15 1.8e-06 6.8e-05 23.6 1.0 1 23 264 286 264 286 0.97 6 15 1.6e-06 5.9e-05 23.8 1.5 1 23 292 314 292 314 0.98 7 15 1.7e-05 0.00063 20.6 3.4 1 23 319 341 319 341 0.98 8 15 0.014 0.52 11.4 0.8 1 23 346 368 346 368 0.97 9 15 2.8e-06 0.0001 23.0 0.5 1 23 374 396 374 396 0.98 10 15 1.4e-05 0.00054 20.8 3.1 1 23 402 425 402 425 0.98 11 15 0.3 11 7.2 1.5 3 23 436 456 434 456 0.96 12 15 5.7e-05 0.0021 18.9 1.1 1 23 462 484 462 484 0.98 13 15 6e-05 0.0022 18.9 1.7 1 23 490 512 490 512 0.98 14 15 6.2e-06 0.00023 22.0 1.3 1 23 518 540 518 540 0.97 15 15 4.1e-07 1.5e-05 25.7 2.5 1 23 546 568 546 568 0.98
Sequence Information
- Coding Sequence
- atggAATCAATACTTAATAAAGCTGGAACATTAGAAGAAAGTGTCAAAATGGAACATGAACTAATTAAAGAAGAACatattaaaatggaacatgtAGTAATTAAAGAGGAAATACTAGACGAATATGAGCAGATCTTTACGGAGAAATCGGAAAACATAAAACTTGAACAATTAAATACCGAATTAacaattaaagaagaaaaattcgATGAAAGTATTTCATCGAATCAATCGATTCATACTGAAAATAAACGTTTtccatgtgatatttgtgacaaaacatttactcaTCCATCCAGTCGAAATAAACATCGTAAACGACTTCACACCGACCCAAAAcatttttcatgtgatgtttgtgacaaaacatttaactatCCAAGTAGTTTAAATCGACATCAACGAAATCACACCAACGAAAAATTGAATACAGAATTAATCATAAAGGATAAAACATTCGATGGAAATGTTTCGGAAGTAATTAAAGAGGAAATACTAGACGATGAAATCGAATACGAGCAGATCTTCACAGAGAAATCGGAAACCATAAAACATGAACAATTAAAtaccaaattaataattaaagaagaaattcAATCGATTCATACTGAAAATAAACGTTTtccatgtgatatttgtgacaaaacatttgaCTATCAAAGCAGTTTAATTCGACATAAACAAATTCACACTGACCCAAAatctttttcatgtgatgtttgtgacaaaacatttaaacaggaaaacaatttaactcaacataaacgaattcacgtCGAAGAAAATCCATTTTCCTGTCTTATTTGTGGCAAAACATTTGATCAACAGACCaatttaaatcaacataaaCAAATTCACAGCAACggaaaatcattttcatgtgatatttgtgaacAAACATTTACACGACGAAGTTATTTagctcgacataaacgaattcacggtgaaaaatgtttttcatgtgACAACTGTGCGAAAACATTTACCCATCAAAGTACTTTAGTGCGACATAAACGTATTCATTCGCgaaaaccattttcgtgtgatATTTGTATGAAAGCATTTCCCAGTCAAAGCTGTTTAATTccacataaacgaattcacaacGGGGAAAAACCTTTTGTTTGTGATTTTTGTGATCAAACATTTATTCAACGCAGCGATTTAACGGTACATACACGAATTCACACCGGCGTAAAACCGTTTCAGTGTGATCGCTGTGATAAAGCATTCTATACGCGTGGTGATTTAAACAAAcatcataaacgaattcatatcGGAGAAAAACGTAAAAGACCATTTGGTTGTGGcgtttgtatgaaaaaatttacatgcCAAAGTAATTTAGTTTTACATGAGCGTATTCACAATGGTGAAAAACCATATGCGTGTGATGTTTGTTCGAAAACATTTGCCTTGCAACAtaatttagttcaacataaacgtattcatacgggagaaaaaccGTTTTCATGTGATATCTGTAAGAAATCATTTAATCAGCAGAGCTATGCTCtgcaacataaacgaattcatacgggTGAAAAACGTTTTGCATGTGATGTTTGCGATAAGAGTTTTGTCCACAGGAGTAGTTTAAATGGACATAAACGGATTCATACCggggaaaaaccattttcgtgtgatgtttgtgataaaagtttTAAGAATCGAGGCAATTTTTGGAAACATAAACGTACTCACAcaagagaaatacttttttccCCAGTGGCGTAG
- Protein Sequence
- MESILNKAGTLEESVKMEHELIKEEHIKMEHVVIKEEILDEYEQIFTEKSENIKLEQLNTELTIKEEKFDESISSNQSIHTENKRFPCDICDKTFTHPSSRNKHRKRLHTDPKHFSCDVCDKTFNYPSSLNRHQRNHTNEKLNTELIIKDKTFDGNVSEVIKEEILDDEIEYEQIFTEKSETIKHEQLNTKLIIKEEIQSIHTENKRFPCDICDKTFDYQSSLIRHKQIHTDPKSFSCDVCDKTFKQENNLTQHKRIHVEENPFSCLICGKTFDQQTNLNQHKQIHSNGKSFSCDICEQTFTRRSYLARHKRIHGEKCFSCDNCAKTFTHQSTLVRHKRIHSRKPFSCDICMKAFPSQSCLIPHKRIHNGEKPFVCDFCDQTFIQRSDLTVHTRIHTGVKPFQCDRCDKAFYTRGDLNKHHKRIHIGEKRKRPFGCGVCMKKFTCQSNLVLHERIHNGEKPYACDVCSKTFALQHNLVQHKRIHTGEKPFSCDICKKSFNQQSYALQHKRIHTGEKRFACDVCDKSFVHRSSLNGHKRIHTGEKPFSCDVCDKSFKNRGNFWKHKRTHTREILFSPVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -