Nfla013613.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986042.1:115473658-115475712[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.1e-05 0.00077 20.3 2.4 1 23 68 90 68 90 0.98 2 19 4.2e-05 0.0016 19.4 0.6 1 23 96 118 96 118 0.98 3 19 0.0021 0.078 14.0 2.8 1 23 124 147 124 147 0.95 4 19 0.00038 0.014 16.3 2.5 1 23 153 175 153 175 0.98 5 19 0.00028 0.01 16.8 1.4 1 23 181 203 181 203 0.98 6 19 5e-05 0.0019 19.1 0.8 1 23 209 231 209 231 0.97 7 19 0.0084 0.31 12.1 4.5 1 23 237 259 237 259 0.95 8 19 3.1e-05 0.0012 19.8 0.7 1 23 283 305 283 305 0.98 9 19 0.0011 0.04 14.9 1.3 1 20 338 357 338 358 0.95 10 19 1.7e-06 6.1e-05 23.8 1.6 1 23 366 388 366 388 0.98 11 19 1.2e-06 4.4e-05 24.2 1.2 1 23 394 416 394 416 0.98 12 19 0.00036 0.013 16.4 3.6 1 23 422 444 422 444 0.97 13 19 0.0013 0.047 14.7 1.0 1 23 450 472 450 472 0.97 14 19 4.6e-06 0.00017 22.4 1.6 1 23 478 500 478 500 0.98 15 19 0.0001 0.0038 18.2 3.6 1 23 506 528 506 528 0.98 16 19 0.00097 0.036 15.1 1.0 1 23 558 580 558 580 0.98 17 19 5.4e-06 0.0002 22.2 0.5 1 23 586 608 586 608 0.97 18 19 0.00082 0.031 15.3 4.6 1 23 614 636 614 636 0.98 19 19 0.0011 0.04 14.9 1.3 3 23 644 664 642 665 0.94
Sequence Information
- Coding Sequence
- ATGTcggatgaaataaataattctccGTTAATCAAAGCtgagaacattaaaattgaagaatttgtcacagaaaacataaaaactgaagAATTACatacagaaataataattaaagaagaaaatataaaaatcgaaCCGGAATTACAAAACGATAATAAAATACTAGAAGATAGTTTTTCATTGCAAGGTATCGAAAAACGTTTtccatgtgatatttgtgaaaagaaatttatttccgAGTACCATTTAAATCGACATAAACAAAGTCATACTGggaaaaaaccattttcatgtgatatttgtaataaaagatTCGCTCAGAAACAACGTCTGATTGCCCATACACAAATTCATACTggcgaaaaaccattttcatgtaatatttgtaatgaaaaattttcatttcaaacgtTGTTACATCAACATTCACAAAGTGGACATGCGGACGATAAACTGTTTTCATGTGATTTATGtgagaaaaaatttactttcaaaacaagtttagttcaacataaatTAACTCATACGGGAGAAAGACGTTTTCGTTGCGATATTTGTGATGAAGAATTTCAACACGCgaatagtttaattttacataaacgTAAACATACGGAAGAAAAACTGTTtgcatgtgatgattgtgataaacAATTTACATTGAACAAATATCTCGTACAACATCGACGAATTCATACgagagaaaaaccttttttatgTGAGTTTTGTgatgaaaaatttactttccgAAGTAGTTTAGATCATCATAAACGATATCATACTAAAGAACAGATCGAAAATAACAAAATCGATGCAGAATTTTTCACAGATTTAATAGAAGAAAAACGTTTTCCGTGTGAtatatgtgataaaaaatttatttccaatgagtttttaattcaacataaacgaaatcATGCTGGAAAAATTACAGGCGAAAACCCGTTGAATATAAAAATCGAGGCAGAAATACAAAAAGATGAAAGTTTTACACTACAAGGTTTCGAAAAACGTTTTCcctgtgatgtttgtgatcgGAAATTTATATCCAAGTTCCATTTATTTCAACATAAAGCATGCCACACAAAAGACAATCAATTTTCctgtgatatttgtaataaaaaatttacacgaaAAGGAAGTTTAGTGaatcataaacgaattcatacaggtgaaaaaccattttcatgtgatgtttgtgataaaaaatttaatcaaaatcaacATTTAGTTGCCCATATACGAATTCATACCGGTGAAAAACCATTCTCAtgtaatatttgtaatgaaaaatttacacataaaactAGTTTAGTTCAGCATAAATTAaatcatactggagaaaaacgtttttcatgtgatgtgtgcgaggaaaaatttaaattctccAACAGTTTAATTGtacataaattaaaacataccggcgaaaaaccattttcatgtgatgtttgtgagaaaaaatttatacagaaaCAACATCTAGTTGAACATATGCGAGTTCATACgggtgaaaaaccattttcatgtgagtTTTGTGCGAAAACATTTACCTTCAAATCCAGTTTAGATCGTCATAAACGAACTCATGTCGACGACCAGTTGGAAAATCACGATATCGAACCTGTAGAATTACATATCGAATCGTCAAAAGAAACGAGAAACAGTGAAAAACATTTTCCATGTGATGTATGcgatcaaaaatttatatcagagAACTTTTTATTTCAACATAAACGTAGTCATGCTGGAAAAACCGTTTTCGCATGtcgtgtttgtaataaaacatttacgcGTCCAGATAAATTAATTCAGCATGAACGAATCCATTCGGCGGATaaaccattttcgtgtgatgtttgtgagaaAAAATTCACGTTGACACATCATTTAATTTCTCATATGCAGAACCATGCCAGGAAAAAACTTTTGGCATGCGATGATTGTgatattaaatttcgatttgagAGAGATTTCAAtgcacataaacgaattcatcaTGATGACGAAAATCCGTTTGTGTTCGTTGCGATCGAACAATTTAAAACCGAAACTGGTTAA
- Protein Sequence
- MSDEINNSPLIKAENIKIEEFVTENIKTEELHTEIIIKEENIKIEPELQNDNKILEDSFSLQGIEKRFPCDICEKKFISEYHLNRHKQSHTGKKPFSCDICNKRFAQKQRLIAHTQIHTGEKPFSCNICNEKFSFQTLLHQHSQSGHADDKLFSCDLCEKKFTFKTSLVQHKLTHTGERRFRCDICDEEFQHANSLILHKRKHTEEKLFACDDCDKQFTLNKYLVQHRRIHTREKPFLCEFCDEKFTFRSSLDHHKRYHTKEQIENNKIDAEFFTDLIEEKRFPCDICDKKFISNEFLIQHKRNHAGKITGENPLNIKIEAEIQKDESFTLQGFEKRFPCDVCDRKFISKFHLFQHKACHTKDNQFSCDICNKKFTRKGSLVNHKRIHTGEKPFSCDVCDKKFNQNQHLVAHIRIHTGEKPFSCNICNEKFTHKTSLVQHKLNHTGEKRFSCDVCEEKFKFSNSLIVHKLKHTGEKPFSCDVCEKKFIQKQHLVEHMRVHTGEKPFSCEFCAKTFTFKSSLDRHKRTHVDDQLENHDIEPVELHIESSKETRNSEKHFPCDVCDQKFISENFLFQHKRSHAGKTVFACRVCNKTFTRPDKLIQHERIHSADKPFSCDVCEKKFTLTHHLISHMQNHARKKLLACDDCDIKFRFERDFNAHKRIHHDDENPFVFVAIEQFKTETG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -