Basic Information

Insect: Nineta flava
Gene Symbol: -
Assembly: GCA_963920215.1
Location: OY986042.1:23347465-23350782[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.009 0.34 12.0 2.9 1 23 41 63 41 63 0.98

2 18 0.0021 0.078 14.0 0.4 1 23 69 92 69 92 0.92

3 18 6.7e-06 0.00025 21.9 2.0 1 23 99 121 99 121 0.98

4 18 0.00067 0.025 15.6 0.7 1 23 126 149 126 149 0.94

5 18 0.0012 0.046 14.7 1.6 2 23 155 177 155 177 0.91

6 18 2.1e-06 7.9e-05 23.4 2.0 1 23 186 208 186 208 0.98

7 18 0.0023 0.084 13.9 3.4 1 23 211 233 211 233 0.97

8 18 0.00017 0.0064 17.4 6.7 2 23 240 261 239 261 0.97

9 18 7.8e-06 0.00029 21.7 0.2 1 22 267 288 267 288 0.96

10 18 5.8e-05 0.0022 18.9 1.3 1 23 321 343 321 343 0.96

11 18 0.00067 0.025 15.6 1.8 2 23 350 371 349 371 0.97

12 18 3.8e-05 0.0014 19.5 0.8 2 23 378 400 377 400 0.97

13 18 2.1e-06 7.9e-05 23.4 1.8 1 23 405 427 405 428 0.96

14 18 3.2e-05 0.0012 19.7 3.0 1 23 436 458 436 458 0.98

15 18 0.0006 0.022 15.7 0.4 2 23 465 486 464 486 0.94

16 18 3.5e-05 0.0013 19.6 2.3 3 23 494 514 492 514 0.96

17 18 2.2e-07 8.1e-06 26.5 0.6 1 23 520 542 520 542 0.98

18 18 4.8e-05 0.0018 19.2 1.3 1 23 548 570 548 571 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.009	0.34	12.0	2.9	1	23	41	63	41	63	0.98
2	18	0.0021	0.078	14.0	0.4	1	23	69	92	69	92	0.92
3	18	6.7e-06	0.00025	21.9	2.0	1	23	99	121	99	121	0.98
4	18	0.00067	0.025	15.6	0.7	1	23	126	149	126	149	0.94
5	18	0.0012	0.046	14.7	1.6	2	23	155	177	155	177	0.91
6	18	2.1e-06	7.9e-05	23.4	2.0	1	23	186	208	186	208	0.98
7	18	0.0023	0.084	13.9	3.4	1	23	211	233	211	233	0.97
8	18	0.00017	0.0064	17.4	6.7	2	23	240	261	239	261	0.97
9	18	7.8e-06	0.00029	21.7	0.2	1	22	267	288	267	288	0.96
10	18	5.8e-05	0.0022	18.9	1.3	1	23	321	343	321	343	0.96
11	18	0.00067	0.025	15.6	1.8	2	23	350	371	349	371	0.97
12	18	3.8e-05	0.0014	19.5	0.8	2	23	378	400	377	400	0.97
13	18	2.1e-06	7.9e-05	23.4	1.8	1	23	405	427	405	428	0.96
14	18	3.2e-05	0.0012	19.7	3.0	1	23	436	458	436	458	0.98
15	18	0.0006	0.022	15.7	0.4	2	23	465	486	464	486	0.94
16	18	3.5e-05	0.0013	19.6	2.3	3	23	494	514	492	514	0.96
17	18	2.2e-07	8.1e-06	26.5	0.6	1	23	520	542	520	542	0.98
18	18	4.8e-05	0.0018	19.2	1.3	1	23	548	570	548	571	0.96

Sequence Information

Coding Sequence: ATGATAGAAACAACAGAGTTAATTCATACAAAGAATCAGACACATGAAGGTGATCATTCTGTAGAAGAGAATGAATTGAACATGAACAACGATGGATATGTCGTATTAGATGATAACACATACAAATGTCTACGTTGTAAACATGCCTTTAAAACAATTGACGAATGGCAACAACATTATAAAATTCATAAGATACGTAAACGATATTTATGTGACGTATGTCGTGAAACATTCCGTTATAGCTGGGAATTACGACAACATAAAATTAACGTACATAATTTAAATAGCAAATATTATACGTGTGACGTATGCGGAAAAGGATATACATCGAAGAAAACGTTAAATCGACACTCAAAACGTCACACAACCAACGGATTTAAATGTTCGCATTGTACAGAAGGCTATGCAACATTAACACAATTACAGAATCATATCGACGAAGTACATTCCGCATTTTCAGCATACTGTACCatttgcgataaatattttgcaaataaatttaattataagtcTCATTTTCAAGCGTTTCATGACGATGATTACATCGCACAGATTCATACATGTGAGATATGcggtaaaatatataatacgaaAGCGTATTTAAAGAAACATGTTCGAAGTCATGTAGGATATCATTGTGATATATGTGGGAAATTTTTAACTACCAAACAAAGTTTAGATCATCATGTACAATTACACTTGGGTACAACCAAGGTGAAGTGTGACGAGTGTGGTAAACattttagtacaaaaaaaacattacacaCACATAAACGACAACATACGGGTGAGAAACCGTATCAATGTTGGGTATGCGGTAAACGTTTTGTACAACGGTCAAGTTTAGTTATACATACAAGatcatttaatatcaaaattgaaatgGATGAAGATCacgataattttattaataattttaaattaaatacatcaaaaCAAGAACCATCTGAGACGAAACAATTTATTTGTGAAATATGCtcatttagttttaaatataagtatcaattaaaaaatcatttagtcGTACATAACGATACGCGTAGCATTGAATGCGATTACTGTACGAAAAAATTTCGTACAATTGCTTTAATGAAAACACATCGTAAACGGCACTTTCAAAAGTTCACTGTCAAATGCGAACAATGTTCAAAAGGATTTTACACTCGTCAAGAATTGGCGCGACATATGAATTCACAACATAATGCAAATGATTACGTATGCGTTATATGTAATAAGTCTTTTGTAACAAGTTACTCattaaaaatgcatttaaaaatacatcacgATGGTAATACGACAAGAGTTTATCAATGCGATAAATGCGAGAAAACATTTAaagagaaattatatttaaggcGACATTTAAAATTGCATTCGGGTGAAACAGTTGTTGTATGTGATATTTgtggtaaaaaattaaattcaaagaaaagtttACGTGAACATAGGGATTTACACACGGGTGTCAAATCACAATGTTGCAATGTGTGCGGTAAACGTTTTGTGAAATTGAATACATTAATTGTACATCAACGGACGCACACCGGTGAAAAACCGTATGTGTGTAAAgtgtgtgataaaacatttacacaaAGTAGTAGTTTAGCGATACATGTACGATATCATACTGGTGAACGACCATATCGTTGTAATTTATGTGATGCGGGTTTTGTGAGTCGATATCTTTTGAATGCACATCAAAAAAATCATCATTCGTTGTTGGTGCCGAAGATTGAGCTGACTCATAACACGGATGAGATGAATTGA
Protein Sequence: MIETTELIHTKNQTHEGDHSVEENELNMNNDGYVVLDDNTYKCLRCKHAFKTIDEWQQHYKIHKIRKRYLCDVCRETFRYSWELRQHKINVHNLNSKYYTCDVCGKGYTSKKTLNRHSKRHTTNGFKCSHCTEGYATLTQLQNHIDEVHSAFSAYCTICDKYFANKFNYKSHFQAFHDDDYIAQIHTCEICGKIYNTKAYLKKHVRSHVGYHCDICGKFLTTKQSLDHHVQLHLGTTKVKCDECGKHFSTKKTLHTHKRQHTGEKPYQCWVCGKRFVQRSSLVIHTRSFNIKIEMDEDHDNFINNFKLNTSKQEPSETKQFICEICSFSFKYKYQLKNHLVVHNDTRSIECDYCTKKFRTIALMKTHRKRHFQKFTVKCEQCSKGFYTRQELARHMNSQHNANDYVCVICNKSFVTSYSLKMHLKIHHDGNTTRVYQCDKCEKTFKEKLYLRRHLKLHSGETVVVCDICGKKLNSKKSLREHRDLHTGVKSQCCNVCGKRFVKLNTLIVHQRTHTGEKPYVCKVCDKTFTQSSSLAIHVRYHTGERPYRCNLCDAGFVSRYLLNAHQKNHHSLLVPKIELTHNTDEMN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00332743;
90% Identity: -
80% Identity: -