Nfla010932.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- PSPH
- Assembly
- GCA_963920215.1
- Location
- OY986042.1:49741109-49763711[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00035 0.013 16.5 2.5 1 23 45 67 45 67 0.98 2 15 8e-06 0.0003 21.6 0.5 1 23 81 103 81 103 0.98 3 15 2.5e-07 9.2e-06 26.4 0.3 1 23 109 132 109 132 0.98 4 15 7.7e-05 0.0029 18.5 1.6 1 23 138 160 138 160 0.98 5 15 1.9e-05 0.00072 20.4 3.7 1 23 364 387 364 387 0.96 6 15 8.4e-06 0.00031 21.6 0.7 1 23 393 415 393 415 0.97 7 15 2.5e-07 9.4e-06 26.4 2.3 1 23 421 443 421 443 0.98 8 15 0.00047 0.017 16.1 2.1 1 23 448 470 448 470 0.98 9 15 6.1e-06 0.00023 22.0 2.9 1 23 477 499 477 499 0.98 10 15 1.9e-06 7e-05 23.6 0.4 1 23 505 527 505 527 0.97 11 15 3e-05 0.0011 19.8 1.6 3 23 535 555 533 555 0.96 12 15 2.9e-06 0.00011 23.0 2.7 1 23 561 583 561 583 0.98 13 15 1e-05 0.00039 21.3 1.4 1 23 589 611 589 611 0.98 14 15 0.00011 0.0042 18.0 0.4 1 23 617 640 617 640 0.97 15 15 3.7e-05 0.0014 19.5 0.4 1 23 646 669 646 669 0.97
Sequence Information
- Coding Sequence
- atgtcaagTTATACATTTCATGGTATAAGTAATCTGTTATTCAAAgatgaaaacatcaaaactgaAAACCAATTACATCCAGAATTAATGATTAAGAAAGAAGTGCCGGAAGAAAAACCGAAGGAAAAgcctttttcatgtgatgtttgtgatagaAAATTTAACCAATTTGTACATTTAGTTTCACATAAACGTATTCATACGGttgaacataaacgaattcatactggagaaaaaccttatgCGTGTGATGTATGTGCAAAAGCATTTACGACCAATAGTGAtttagttaaacataaacgaaaaCATACGGGAGAGAAACCTtttacatgtgatgtttgtggtaaATCGTATACGCAGAAAGCCAGTCTAGCTAAACATCAACGAATAGTTCATACTGGAGAGAGACCTTTTTACTGTAATATATGCGAGAAATCATTTACCACTCAATACATTTTAGCAAAACATCAAAAGCTTCATACTGGCGAACAATCCGTTTCAGGTGTGACTCGTGAAAAAACATTAaccaatcaaataaatttacttgGAAATCAACGTATTCCAAATTTTCCATacaatatttacgaaaaaacatttactcagAATCATCATTTACTTGAAAATCGACAAATTCCCAACCCTTTAAATCCCTTTTCATATTTCAGTGGTGTTAGCACTACTGTAGAAAATACAGGTCTAACTAGTTCTTCTATTCCAGCTCCTGACAATTCCCGTCCTACAATCACCACCACAATCCACTCTGTCGAAAGTATTCGAAGTGAATCACAAATCGATGCAGAAtcaataattaaagatgaaaatattaaaattgaacaacaggaaaattcattttcatatGATGTTTGTGATAACAGTAATAGTAACGGGGCAGATGAAGGAGGGGCCATAGATGATACAGGTCCGTCTAGCCCGTTTGTGGAAAACATCAAACCtgaacaaaaattagaaattgaattaattgtGAAAGATGAAAATATCAAAACTGAAGAACCATTTCATTCTGGTGAAGGTGGTAGCTTATTAAAAGATGATTTGAATAATGTAAAAGTCAAAGATgaggaaaaaccattttcatgtgatacaTGTGGTAAAACATTTGCGAAACATAGAAATTTACGCAGACATAAACGACTTATTCATAATAAAGGAAAAACATTTCCATGTGATGATTGCGATAAAGTATTTAAACACCAAAGAGATTTGGTGATACATGAGCGTGATCATACTGGCGAAGCATGTTACCCATGCAACGaatgtgacaaaacatttacaaacacaaaaaatttacgtAGACATCAAAAACTGCATACACGATTCaatttttcatgtgatgtttgtgatcaaATATTTACATTCCATAAAGATTTAGCTGatcataaacgaactcattcgACTGGCgataaaccattttcatgtgatatttgtgataaaaaatttaatcggaAAAGCCTTTTCACCGAACACAAACGAATGCATACGGGTGAAAAACCATTTGCATGTACTCTTTGTGACAAATCATTTACCAGTAATCGAGCTTTAACTGCACATATGGGTACTCATACGGGTAAAAAACCGCATTTATGTCCAGTTTGTGGTAAAGCATTCGCAAAAAATCTCGACTTACATAGGCATCAACGTATACATACTGGCGAAAGACCATTTACATGCGATTATTGtggtaaaacatttataaatcgGTGTAATTTAGTTGAACATAGACGAATTCATtcgggagaaaaaccatttacaTGCGAAATTTGTGCGAAATCATTTACACAACGCATGAATTTGTATAGGCATCAAGTGACACATACGAAAGAGAAACGTTTTACGTGTAGTATTTGTGCGAAAACATTCGGCTATAAATCCAGTTTAATGGAACATGAACGAATTATACATAATGgagaaaaacattttacatgTAATGTTTGTGAGAAAAAATTTGGTCAGAAATCCAGTTTATTGGAACATGAACGTGTTATACATAATGGAGAAAAACGTTAtacgtgtgatAATACTTCCAATCACACCACATTTAATAACATGTATTTTACGGAAACACAAACAACCTGGAAGAATGCAGACGCTGTTTGTTTTGACGTGGATTCAACATTAATCCAAGAAGAGGGTATTGATGAACTtgccaaattttgtttgaaaggcGATGAAGTTGCTAATTTGACTAAAAAAGCGATGGGTGGTTCAATGACATTCGAGGAATCGTTACGATTacgtttaaatataatcaaaccAAATTTGGGACAAATTAGGGATTTTATACGAATGCAACCGCCAAAATTAACACCTGGCGTTAAGCAACTTATCCAAACTTTACAAAGTCGACAGAtaccaatttatttaatatctggTGGATTTCGTTCGATAATTGTACCAATTGCTAGTCAATTAAATATTCCTTTGGAAAACATATATGCTAATCGACTAAAATTCTATTATAATGGTGAATATGCTGGATTTGATGAAAATGAACCAAcatcgaaaagtggtggtaaaTCTCAagtaatacaatatttaaaagaaaaatatggatataaaaatttgataatgatTGGAGATGGCGCAACAGATTTAGAAGCATGTCCACCGGCTGATGCATTTATTGgtTATGGTGGCAATGTGATACGCGAAAAAGTAAAATCAAATGCTAAATGGtttgtaacagattttcaagAATTAAATCAAGTGCTTAAACATGATTAA
- Protein Sequence
- MSSYTFHGISNLLFKDENIKTENQLHPELMIKKEVPEEKPKEKPFSCDVCDRKFNQFVHLVSHKRIHTVEHKRIHTGEKPYACDVCAKAFTTNSDLVKHKRKHTGEKPFTCDVCGKSYTQKASLAKHQRIVHTGERPFYCNICEKSFTTQYILAKHQKLHTGEQSVSGVTREKTLTNQINLLGNQRIPNFPYNIYEKTFTQNHHLLENRQIPNPLNPFSYFSGVSTTVENTGLTSSSIPAPDNSRPTITTTIHSVESIRSESQIDAESIIKDENIKIEQQENSFSYDVCDNSNSNGADEGGAIDDTGPSSPFVENIKPEQKLEIELIVKDENIKTEEPFHSGEGGSLLKDDLNNVKVKDEEKPFSCDTCGKTFAKHRNLRRHKRLIHNKGKTFPCDDCDKVFKHQRDLVIHERDHTGEACYPCNECDKTFTNTKNLRRHQKLHTRFNFSCDVCDQIFTFHKDLADHKRTHSTGDKPFSCDICDKKFNRKSLFTEHKRMHTGEKPFACTLCDKSFTSNRALTAHMGTHTGKKPHLCPVCGKAFAKNLDLHRHQRIHTGERPFTCDYCGKTFINRCNLVEHRRIHSGEKPFTCEICAKSFTQRMNLYRHQVTHTKEKRFTCSICAKTFGYKSSLMEHERIIHNGEKHFTCNVCEKKFGQKSSLLEHERVIHNGEKRYTCDNTSNHTTFNNMYFTETQTTWKNADAVCFDVDSTLIQEEGIDELAKFCLKGDEVANLTKKAMGGSMTFEESLRLRLNIIKPNLGQIRDFIRMQPPKLTPGVKQLIQTLQSRQIPIYLISGGFRSIIVPIASQLNIPLENIYANRLKFYYNGEYAGFDENEPTSKSGGKSQVIQYLKEKYGYKNLIMIGDGATDLEACPPADAFIGYGGNVIREKVKSNAKWFVTDFQELNQVLKHD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -