Basic Information

Insect: Nineta flava
Gene Symbol: -
Assembly: GCA_963920215.1
Location: OY986040.1:134288056-134289717[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 8.8e-05 0.0033 18.3 0.1 1 23 126 148 126 148 0.98

2 15 0.00053 0.02 15.9 1.8 1 23 154 177 154 177 0.97

3 15 0.00043 0.016 16.2 0.3 1 23 183 205 183 205 0.98

4 15 3e-06 0.00011 23.0 0.4 1 23 211 233 211 233 0.98

5 15 6.6e-06 0.00024 21.9 1.3 1 23 240 262 240 262 0.98

6 15 0.00011 0.0041 18.0 0.2 1 23 268 290 268 290 0.97

7 15 5.3e-07 2e-05 25.3 0.9 1 23 296 318 296 318 0.98

8 15 6.2e-06 0.00023 22.0 1.1 1 23 325 348 325 348 0.96

9 15 0.0016 0.058 14.4 0.2 1 23 356 378 356 378 0.97

10 15 3.5e-06 0.00013 22.7 0.5 1 23 384 406 384 406 0.98

11 15 1.6e-07 5.8e-06 27.0 0.2 1 23 412 435 412 435 0.97

12 15 0.00045 0.017 16.1 2.8 1 23 441 462 441 462 0.98

13 15 5.7e-05 0.0021 18.9 1.8 1 23 468 490 468 490 0.98

14 15 4.6e-07 1.7e-05 25.5 2.4 1 23 496 518 496 518 0.98

15 15 3e-05 0.0011 19.8 0.8 1 23 524 546 524 546 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	8.8e-05	0.0033	18.3	0.1	1	23	126	148	126	148	0.98
2	15	0.00053	0.02	15.9	1.8	1	23	154	177	154	177	0.97
3	15	0.00043	0.016	16.2	0.3	1	23	183	205	183	205	0.98
4	15	3e-06	0.00011	23.0	0.4	1	23	211	233	211	233	0.98
5	15	6.6e-06	0.00024	21.9	1.3	1	23	240	262	240	262	0.98
6	15	0.00011	0.0041	18.0	0.2	1	23	268	290	268	290	0.97
7	15	5.3e-07	2e-05	25.3	0.9	1	23	296	318	296	318	0.98
8	15	6.2e-06	0.00023	22.0	1.1	1	23	325	348	325	348	0.96
9	15	0.0016	0.058	14.4	0.2	1	23	356	378	356	378	0.97
10	15	3.5e-06	0.00013	22.7	0.5	1	23	384	406	384	406	0.98
11	15	1.6e-07	5.8e-06	27.0	0.2	1	23	412	435	412	435	0.97
12	15	0.00045	0.017	16.1	2.8	1	23	441	462	441	462	0.98
13	15	5.7e-05	0.0021	18.9	1.8	1	23	468	490	468	490	0.98
14	15	4.6e-07	1.7e-05	25.5	2.4	1	23	496	518	496	518	0.98
15	15	3e-05	0.0011	19.8	0.8	1	23	524	546	524	546	0.97

Sequence Information

Coding Sequence: atGTCTGAAATGGCTAATCAGTTGTTAATTAATGATGAAAACGTTAAAATTGAACATCAAAATATCAAAACAGAATTGATAATTCAAGATGAACATAATGATAATAATCAACCGATTGAACATGaactccaaaaagaaaaaatgaaaattgaacatatagaattgataattccaaataAAGTCATCGATGTTAATCAGCacgcaaatattaaaattgaacaattaaGTACAGAATTGATAATCAAAGATGAAAATCAACGTTCAACTCAAgatgaaaacattaaaatggATGAAGAATTCATAATTCCAGATCAAATATTTACTAAACAAGGCAGTTTAGTTCAACATACTTTAATTTCTACTAGGAAAAAACTATatgcatgtgatgtttgtaataaaatatttgccgtgttaaataatttaactgaacataaacgcATTCATACAGGAGAACgaccatattcatgtgatttttgtgatgtaacattttttcaaaaatacagtttacttgaacataaacgaatctaTCATAAAAATGTAGAACAATATTCATGTGATGcgtgtaataaaatctttaacTTTCCGCGTGACCTAATTGAACATAAACGCGTTCATGCTGGAGAATTACCGTatgcatgtgatatttgtgataaaaaattttcacaaaaatacggtttagttgaacataaacgaattcatactgttgaacaaaaaccatattcatgtgatatttgtgatagaaaatttacacaaaagtacgGTTTAATTGAACACAAACGACAGCATAAGAATGAGAAATtatattcatgtgatgtttgtgataaattttttactgttttaaGTGCATTAATTGAGCATAAACAATTGCATATCCCACAAAAACCATACTCGTGTAATGTTTGTGGTAAAACATTCTCACAGAAATACGGTTTActtgaacataaacgaattcatgcTGTGAAAGAATTACCATatgcatgtgatatttgtgataaacgATTTTCACAAAAATACGGTTTATTTGAACACACCCGACAACAGCATatgaatgaaaatgaaaaactatATTCGTGTAATGTTTGTGAGAAACTTTTTACTGTTTTAAGTGCATTAATTGAGCATAAACAATTGCACGCGCAAGAAAAACCATACTCGTGTAATGTTTGTGGTCAAAAATTTTCACAGAAATACGGTTTAGTTGAACATACACGAATTCATACGGTTGAAAAACCGTAtccatgtgatgattgtgataaaacattttcacAGAAATATGGTTTAATTGAACATCAacgaattattcataaaaaagagaaaatttattcgtgtgatgtttgtaaaaaaggatttagacagaaatatttaaaacaacataAACGAATACATAAAGTGGATAAACCATATGCATGTCATATTTGTTATGATACATTTTCGCGGAAAGATAGTTTAATTAGTCATCAGCGAATTCATCCACGTGAAAAACCATACGCGTGTGATgtatgtgataaaacattttgcCAGAAATATGGTTTAATACGGCATCAACGAAGTCATAATGAGAAAAAACCATTTGcatgtgatttttgtgataaaaaatttactaatgaaaatggtttagctaaacataaacgaattcattttGAAGAAACGCCTGTATTGTAG
Protein Sequence: MSEMANQLLINDENVKIEHQNIKTELIIQDEHNDNNQPIEHELQKEKMKIEHIELIIPNKVIDVNQHANIKIEQLSTELIIKDENQRSTQDENIKMDEEFIIPDQIFTKQGSLVQHTLISTRKKLYACDVCNKIFAVLNNLTEHKRIHTGERPYSCDFCDVTFFQKYSLLEHKRIYHKNVEQYSCDACNKIFNFPRDLIEHKRVHAGELPYACDICDKKFSQKYGLVEHKRIHTVEQKPYSCDICDRKFTQKYGLIEHKRQHKNEKLYSCDVCDKFFTVLSALIEHKQLHIPQKPYSCNVCGKTFSQKYGLLEHKRIHAVKELPYACDICDKRFSQKYGLFEHTRQQHMNENEKLYSCNVCEKLFTVLSALIEHKQLHAQEKPYSCNVCGQKFSQKYGLVEHTRIHTVEKPYPCDDCDKTFSQKYGLIEHQRIIHKKEKIYSCDVCKKGFRQKYLKQHKRIHKVDKPYACHICYDTFSRKDSLISHQRIHPREKPYACDVCDKTFCQKYGLIRHQRSHNEKKPFACDFCDKKFTNENGLAKHKRIHFEETPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -