Nfla016834.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- SALL1
- Assembly
- GCA_963920215.1
- Location
- OY986043.1:92982619-92986861[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0017 0.064 14.3 0.5 2 23 153 173 152 173 0.97 2 18 4.2e-07 1.6e-05 25.6 0.2 1 23 179 201 179 201 0.99 3 18 2.1e-05 0.00078 20.3 4.6 1 23 207 230 207 230 0.98 4 18 0.11 4.1 8.6 1.1 1 23 242 264 242 264 0.91 5 18 2.5e-05 0.00092 20.1 1.9 1 23 272 294 272 294 0.96 6 18 0.00079 0.029 15.3 3.6 1 23 300 322 300 322 0.99 7 18 0.002 0.074 14.1 1.8 1 23 328 350 328 350 0.98 8 18 0.00037 0.014 16.4 5.7 1 23 356 378 356 378 0.97 9 18 7e-07 2.6e-05 24.9 0.7 1 23 384 406 384 406 0.98 10 18 1.1e-05 0.00042 21.1 1.3 1 23 412 435 412 435 0.96 11 18 0.0024 0.088 13.8 2.7 1 23 572 594 572 594 0.98 12 18 8e-05 0.003 18.5 3.9 2 23 624 645 623 645 0.94 13 18 0.00026 0.0097 16.9 1.6 1 23 651 673 651 673 0.98 14 18 1.6e-05 0.00059 20.7 2.3 1 23 679 701 679 701 0.96 15 18 2.1e-06 7.9e-05 23.4 1.8 1 23 707 729 707 729 0.98 16 18 2.8e-07 1e-05 26.2 0.8 1 23 735 757 735 757 0.98 17 18 6.1e-07 2.3e-05 25.1 2.1 1 23 763 785 763 785 0.99 18 18 2.1e-07 7.8e-06 26.6 0.9 1 23 791 813 791 813 0.98
Sequence Information
- Coding Sequence
- atgattaattttgagaaaatatgtCGAACCTGTTCATCTGAGGGTGAATTACAATCACTTTTTATCGAAGATCCAATTCTACTAGCCGATATGTTGAATCAAATAGTTGATGTTAAGgCTAATAAAGATGATAATTTTccacaaaaaatttgtacatactgcgtaaataaattaaaatccgcttactattttatacaacaatgtCAAGATATAAACACTAAACTAAAAGAATCagtaaatacacaaaattattataaattcgaAGAGAGTTATGAAGAAAATGCTgaagaaatcaaaataaaaaatgaaacgaTCGAGGAATATAACGAAGAATTCAACTCATACacaaatttagaatttttcgTTGATAACACAGATTCCATAGACGATATTAAAGAAACTAAACCAGATAATTCAGATAACAATTCAAATACGAAGAGGAAGATTAAGATAATCGAATGTGATGTATGTTTAAAGACTTTGCGTCAGGGTAACCTTCAACGACATTTAAAAACCCATACGGGAGAACGTCCTTACGTATGCTCTATATGTGGTAAAGATTTCATACAAAAGACAGGATTACAAGCTCATATTCGAAAACATACTGGTGAAAAGCCTTTTAAGTGTAATCATtgtgaaaaatcatttaaacaGCGTGTTCAATTGTTTTACCATATTAAAGTGCAACATACTGAAGAAATTAAGTCATCGCCGACCGGGGAATTTGACTGTAATatatgtaaagaaaaattttcggATCCATGTATTTTAGCATCacataaattattacataagaCAGTTACAACAAAATCATATTTGTGTAATCATTGTGGTAAAGCTTTTCTGTCGAATTCCAAATTACAAGAACATATTCGTACACATACCGgagaaaaaaagtataaatgtgATACTTGTGATAAATCGTTTACATTATATTCGGTCTTACATTCACATCGTAAAATACATTCCgttgaaaaatcatataaatgtaGATTTTGTGAGAAGTTGTTTTCAACGAAATTATCGTTAAATGTACATGAATTAACTCATACGGGCGACAAACCGTTTAAATGTGAAATTTGTAATCAGAGTTTTCGACAAAGGACACATTTAAAGTATCACAGTTATACGCATACGGGTGAGAAACGATATAAATGTACATACTGTGATAAGCAATTTGCATTGAAAGGTAATTTAACGGTGCATATGCGAGCGCACACGGGGGAAACTCCATACGTTTGTTTAATTTGTGACAAAGGTTTTTATGACTCGAGTAGTTTGAAACGacataaattgaaaaaacatttattggTGGATAATATTAAAACTGAACAAGTGATCAAAGATGATAATTATCCCCAAAATATTTGTGTTCattgtttagaaaaattaaaatctgcATACTTGTTTAAGAAACAGTGTCAAGAGGTAAacgataaatttgaaaaatatttgagtgCCAATGAAAAGTTAATCGATTCAGTTAAGGTAGAAAACTTATCCAATGATTCAAATGACGGCGGAAATGATGAAGTAGAAGATTTTCCTAAATTAACTTTAGAATACGTATCGGTCAAGGATGAAAATTCCCCACCATTGTCAGAACTTATAATTAAAGATAAAACTATTGATGATAATTTACGCTCAATCAAAGATGAAAACATTGAGAATAAACAATTACATATAATTAAAGATAAAATAGTTGAAGAATCTTATTCGTGTAATTTTTGCGAGAAAATATTCACCCATCAAAGTATTTTGGTACAGCACAAACGAATTCATACGGGAGACAAATTATATTCACGTGATGCTAATGATAAAAGTGGTTTAGTAAAACACAAACAGATTCATGCTggggaaaaacaatttttatgtgaaGCTTGTGGTAAACCATTTAATCGAAAGCatcatttaattaaacataaacgaattcatactggtgaaaaaccatattcatgtgatgtttgtgataaaacatttacacaaCAGCACATATTggttgaacataaacgaattcataccggagaaaaactatatttatgtgatgtttgtgataaaacgttTACCCATCAAACTagtttagttcaacataaacgaattcataccggAGAGAAAcgtttttcatgtgatgtttgtgataaaacatttgccCATCAATCCGGTTTAGTGCAACATAAACGGACCCATACCGGAGACaaaccatattcatgtgatgtttgtgataaaacatttacacagCAAGGCAGTTTAATTAagcataaacgaattcatattaGAGAAAAACGTtttacatgtgatgtttgtgataaaacatttacccaaCAAAGAAGTTTAATTAAACATTCACGAACTCATAATGGAGACAAACCTttctcatgtgatatttgtgataaaacattccCCACAAACTACAATTTAGTTCGACATAAACGTATTCATAATGAAAAAGCACCATATTCGTGA
- Protein Sequence
- MINFEKICRTCSSEGELQSLFIEDPILLADMLNQIVDVKANKDDNFPQKICTYCVNKLKSAYYFIQQCQDINTKLKESVNTQNYYKFEESYEENAEEIKIKNETIEEYNEEFNSYTNLEFFVDNTDSIDDIKETKPDNSDNNSNTKRKIKIIECDVCLKTLRQGNLQRHLKTHTGERPYVCSICGKDFIQKTGLQAHIRKHTGEKPFKCNHCEKSFKQRVQLFYHIKVQHTEEIKSSPTGEFDCNICKEKFSDPCILASHKLLHKTVTTKSYLCNHCGKAFLSNSKLQEHIRTHTGEKKYKCDTCDKSFTLYSVLHSHRKIHSVEKSYKCRFCEKLFSTKLSLNVHELTHTGDKPFKCEICNQSFRQRTHLKYHSYTHTGEKRYKCTYCDKQFALKGNLTVHMRAHTGETPYVCLICDKGFYDSSSLKRHKLKKHLLVDNIKTEQVIKDDNYPQNICVHCLEKLKSAYLFKKQCQEVNDKFEKYLSANEKLIDSVKVENLSNDSNDGGNDEVEDFPKLTLEYVSVKDENSPPLSELIIKDKTIDDNLRSIKDENIENKQLHIIKDKIVEESYSCNFCEKIFTHQSILVQHKRIHTGDKLYSRDANDKSGLVKHKQIHAGEKQFLCEACGKPFNRKHHLIKHKRIHTGEKPYSCDVCDKTFTQQHILVEHKRIHTGEKLYLCDVCDKTFTHQTSLVQHKRIHTGEKRFSCDVCDKTFAHQSGLVQHKRTHTGDKPYSCDVCDKTFTQQGSLIKHKRIHIREKRFTCDVCDKTFTQQRSLIKHSRTHNGDKPFSCDICDKTFPTNYNLVRHKRIHNEKAPYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -