Nfla005524.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nineta flava
Gene Symbol
-
Assembly
GCA_963920215.1
Location
OY986040.1:141860220-141864469[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 1.8e-06 6.7e-05 23.7 3.2 1 23 103 125 103 125 0.96
2 17 0.00028 0.01 16.8 1.5 1 23 131 153 131 153 0.97
3 17 6.5e-07 2.4e-05 25.0 2.0 1 23 159 181 159 181 0.99
4 17 8.5e-07 3.2e-05 24.7 1.7 1 23 187 209 187 209 0.98
5 17 3.7e-06 0.00014 22.7 4.5 1 23 215 237 215 237 0.98
6 17 3.9e-06 0.00014 22.6 2.1 1 23 243 265 243 265 0.98
7 17 0.00057 0.021 15.8 1.4 1 23 271 293 271 293 0.98
8 17 0.00059 0.022 15.7 0.2 1 23 393 416 393 416 0.97
9 17 0.00035 0.013 16.5 2.0 2 23 420 442 419 442 0.96
10 17 0.0033 0.12 13.4 2.8 1 21 444 464 444 465 0.95
11 17 1.6e-06 5.9e-05 23.8 1.1 1 23 473 495 473 495 0.98
12 17 1.9e-07 6.9e-06 26.8 0.1 1 23 501 523 501 523 0.96
13 17 3.2e-06 0.00012 22.9 0.5 1 23 529 551 529 551 0.99
14 17 5.9e-07 2.2e-05 25.2 1.7 1 23 557 579 557 579 0.99
15 17 0.0033 0.12 13.4 3.4 1 23 585 607 585 607 0.97
16 17 8e-06 0.0003 21.6 6.2 1 23 613 635 613 635 0.97
17 17 4.9e-07 1.8e-05 25.4 0.8 1 23 641 664 641 664 0.97

Sequence Information

Coding Sequence
atgtcaaaagaTGTGATGGTTACAATTAAAACTGAACAATCAAACGACTTATTTAATATTGGAAATAATTCAAATGATTCATTCAATGATATGAAGGCTACTTTTAACACAGAACAATCAAATTATCCTTTTCATAatgtaaacattaaaattgaagaATTACAAACTGAATTAGTGATTAAGGAAGAAGATGTTGATCTTGGTGAGATTTTAGAAGAACCTGTTTCAAATGATCCAGCTGATGAAACAGAAACACAACAAAATAGTTTACGTGAACATAGTGACACTCCCAATACTAAAAAACCTTTTcaatgtgatgtttgtgataaaaaatttagttcttCAAGTAATTTAATTAGACATAAACATCTTCATCGCAGTAACAATTTATATGCATgcgatatttgtaaaaaaaaatttccaaaagaaATCCAATTAGTTAAACATCAACATATGCATACCGGAGAGAAACCGTATACAtgtgatttttgtaaaaaaaaattttcagatcCAAGTAAtttagttaaacataaacgaattcatacaggtgaaaaaccattttcatgtgaatactgtaatacaaaatttacgtatCAAAGTAGTCTAGCTAAACATATACGAATTCATACGGGAGAAAGACGTTTCTCATGTAATGTTTGTAAGAAAACATTTACGCATAAAAGTACGCTAAACAATCATGAACGTATTCATTCAGGAGCTAAACCGTATCCatgttatatttgtaaaaaatcattTCGGGGGCAAAGTAGTTTATTTAGGCATAAACGTGTGCATACTGGCGAAAAACCTTTTACATGTGAGGTTTGTGATAAGGCATTTATGCAGATGTGTGATTTAGTGAAACATAATCGAATTCATACGGGTGAAAAACCGTTCTCATGTGACGTTTCCGAAGAAGATATATtaccaaaaaatttatgtagTCTATGTGCCGAACAGCTAgtacaaagttataaattaaaaattcaatgtttaACATCAGAGAAAATGTTATTACAATTGATTGAAAATGACGAATCAcaaatgaaaatagaaattgaagaATCATTTGTATATGATGTAAAGACAATTTATGAATACGATGatgaaaataagaatgatatcgATAAAATCAAAGAGGAATATTTGGAAGAGTTTGAATCAAATGATCCGATATACGAATGTAAAGATTGTTCAATTGATTTCCCAACAGAATCGGAATATATGAATCATGTTAAAGTTATGCATAGTACATGTAAATGTGAATATTGTGTTAAAGAATTTTCGAGTGTTGAAGCACTACAAAAACATTTGAACAAATCGCATAAATTCTGTTGTAAAACGTGctcgaaaatatttacaagtaaAATCGAATTTAAACAGCATATTAATGATAATTCTTGTGCTTCAATTCCGTTTGTTTGTGATATatgtgataaaacttttaaaaatagtaCGCGTTATAATATTCACATGCGTaTTCACACAGGTGATAAACgttatttatgtacatattgTGGAAAATCATTTACCGATGGATCAAATTTAGCTGCCCATATACGAATTCATACAGGCGAAAAACgatacaaatgtaaaatttgtggtGAAACATTTGTGCAAGGTTATTCGTTGCGCAGTCATTTAATCACTCATTCGCAAGAGAAAAATTATGaatgtaaaatatgtaataaacgTTTTTCACGAACAAATGGTTTACGACGACATATTTTAACACATTCGGGTGAAAAGAATTATgtttgtgatatttgtgataaacgATTTTTGGATCAACATGAtctaaaatatcataaaaagtttcatacagGTGAACGAAATCATTCatgtaatttatgtaataaatctTTCACACAAAGTACACATCTTAGAACACATTTACGAATACACACGGGCGAGAAACCGTTTGTCTGTTCAGAATGTGGAAAACAATTTCGACAAAAGCAATCTTTGAATATACATATGATGaaagttcataaaaataattcgaTATCGAATTCTGGTTAa
Protein Sequence
MSKDVMVTIKTEQSNDLFNIGNNSNDSFNDMKATFNTEQSNYPFHNVNIKIEELQTELVIKEEDVDLGEILEEPVSNDPADETETQQNSLREHSDTPNTKKPFQCDVCDKKFSSSSNLIRHKHLHRSNNLYACDICKKKFPKEIQLVKHQHMHTGEKPYTCDFCKKKFSDPSNLVKHKRIHTGEKPFSCEYCNTKFTYQSSLAKHIRIHTGERRFSCNVCKKTFTHKSTLNNHERIHSGAKPYPCYICKKSFRGQSSLFRHKRVHTGEKPFTCEVCDKAFMQMCDLVKHNRIHTGEKPFSCDVSEEDILPKNLCSLCAEQLVQSYKLKIQCLTSEKMLLQLIENDESQMKIEIEESFVYDVKTIYEYDDENKNDIDKIKEEYLEEFESNDPIYECKDCSIDFPTESEYMNHVKVMHSTCKCEYCVKEFSSVEALQKHLNKSHKFCCKTCSKIFTSKIEFKQHINDNSCASIPFVCDICDKTFKNSTRYNIHMRIHTGDKRYLCTYCGKSFTDGSNLAAHIRIHTGEKRYKCKICGETFVQGYSLRSHLITHSQEKNYECKICNKRFSRTNGLRRHILTHSGEKNYVCDICDKRFLDQHDLKYHKKFHTGERNHSCNLCNKSFTQSTHLRTHLRIHTGEKPFVCSECGKQFRQKQSLNIHMMKVHKNNSISNSG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-