Basic Information

Insect: Nineta flava
Gene Symbol: -
Assembly: GCA_963920215.1
Location: OY986040.1:135824174-135825961[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 4.6e-05 0.0017 19.2 3.3 1 23 105 127 105 127 0.98

2 17 0.19 7 7.9 2.4 2 23 134 155 133 155 0.92

3 17 1.1e-06 4e-05 24.4 0.6 1 23 161 183 161 183 0.98

4 17 3.4e-07 1.3e-05 25.9 1.8 1 23 189 211 189 211 0.98

5 17 0.00017 0.0064 17.4 2.1 1 23 217 239 217 239 0.98

6 17 6.5e-06 0.00024 21.9 1.4 1 23 245 267 245 267 0.98

7 17 2.2e-06 8.1e-05 23.4 0.6 1 23 273 295 273 295 0.98

8 17 1.7e-06 6.4e-05 23.7 2.6 1 23 301 323 301 323 0.98

9 17 0.00025 0.0093 16.9 1.0 1 23 329 351 329 351 0.96

10 17 5e-05 0.0019 19.1 0.3 1 23 357 379 357 379 0.98

11 17 8.4e-06 0.00031 21.6 1.0 1 23 397 419 397 419 0.98

12 17 0.00011 0.0043 18.0 4.5 1 23 425 447 425 447 0.98

13 17 4e-06 0.00015 22.6 0.5 1 23 453 475 453 475 0.98

14 17 7e-06 0.00026 21.8 0.2 1 23 481 503 481 503 0.98

15 17 5.5e-07 2e-05 25.3 3.6 1 23 509 531 509 531 0.98

16 17 5.7e-06 0.00021 22.1 2.0 1 23 537 559 537 559 0.97

17 17 1.5e-07 5.4e-06 27.1 0.9 1 23 565 587 565 587 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	4.6e-05	0.0017	19.2	3.3	1	23	105	127	105	127	0.98
2	17	0.19	7	7.9	2.4	2	23	134	155	133	155	0.92
3	17	1.1e-06	4e-05	24.4	0.6	1	23	161	183	161	183	0.98
4	17	3.4e-07	1.3e-05	25.9	1.8	1	23	189	211	189	211	0.98
5	17	0.00017	0.0064	17.4	2.1	1	23	217	239	217	239	0.98
6	17	6.5e-06	0.00024	21.9	1.4	1	23	245	267	245	267	0.98
7	17	2.2e-06	8.1e-05	23.4	0.6	1	23	273	295	273	295	0.98
8	17	1.7e-06	6.4e-05	23.7	2.6	1	23	301	323	301	323	0.98
9	17	0.00025	0.0093	16.9	1.0	1	23	329	351	329	351	0.96
10	17	5e-05	0.0019	19.1	0.3	1	23	357	379	357	379	0.98
11	17	8.4e-06	0.00031	21.6	1.0	1	23	397	419	397	419	0.98
12	17	0.00011	0.0043	18.0	4.5	1	23	425	447	425	447	0.98
13	17	4e-06	0.00015	22.6	0.5	1	23	453	475	453	475	0.98
14	17	7e-06	0.00026	21.8	0.2	1	23	481	503	481	503	0.98
15	17	5.5e-07	2e-05	25.3	3.6	1	23	509	531	509	531	0.98
16	17	5.7e-06	0.00021	22.1	2.0	1	23	537	559	537	559	0.97
17	17	1.5e-07	5.4e-06	27.1	0.9	1	23	565	587	565	587	0.98

Sequence Information

Coding Sequence: atgtcattattttataatgaaacgactcaaaataaatcaatcaaagAAGAATGCGTGGATGTTGCTGTACAACAGAGAGATTCTATATTTATCAAGGAGGAATATATAGAAACTGAAGAACCAAAAGATCTCATATTAATCAAGGAAGAATGGATAGAAACTGAAGAACAAAAAGACCCAATGTTTATCCAAGAGGAATGTGAACAAAATGATGCTATACTAATGAAAGTAGAATGTACAAAAATCGAAGAACAAAAAACCCCTACAATACACTCAGAAAtgataattaaagatgaaataataGATGaaccatattcatgtaatttctGTGACAAACGTTTTACCGTACAAACTTGTTTAATTGAACATCAACGTGTTCATGCTGAAAAAAAACCTTTATCATGTGATCTGTGTActaaaacatttcaatttaaaagtgATCTTGTGTTTCATAAACGATTTCATACTGAACGAacaccattttcatgtgatatttgcaATAAATCATTTCCCCAAGAGCAAAATTTAATTGTCCATAAACGTACTCACACTGGCGAAAAATCAttctcatgtgatatttgtaataaatcattttcacAAAAAGGAAATTTAGTGACGCATAAACGACGTCATACAGGCGAaagaccattttcatgtgatgtttgcaaaaaaaaatttaccgtaTATAAATTTCTAATCCAACATCAACGTATTCATACGGGTGAAAGGCCgtattcatgtgatatttgtgataaaaaatttgcccAAGAGCATAATTTAGTGATGCATAAACGAATACATACGGGTGAACGACCGTATTCCTGTGATGCTTGTGACAAAACGTTTAtccagaaacaaaatttaatttcacatcaacgaattcatactggcgAACGACCATTTACGTGCGATGTTTGTAACAAATCATTTTCCAATCAATCCAATTTCTTAtatcataaacgaattcatacggcTGAAAAATTTCATGCTTGTAATATTTGTTCGGAAACATTTAACAACGAACTCAATCtgattcaacataaacgaatccatactgaAGAACCTGTTTATtcctgtgatgtttgtgatcaaAAATTTCCCCAGGAAGAATacttaattcaacataaacgaattcatacggaAGAACAGACAGAATTTGTTCAGGAACATAGACAAGAAAATCGGCcgtattcatgtgatgtttgtggtaaAAAGTTTGTCCAAGAACATACTTTAATaatacataaacgaattcatactggcgAAAGACCATTTTCGTGTTCGATTTGccataaaaaatttaccatgaataaatttttaatccaaCATCAACGAATTCACACGGGAGAACGATCATATTCCtgcgatgtttgtgataaaaagttCGCTCAGGAACAAAATTTGATCACACATAAACGAGTGCATACGGGCGAACGACCATATGCTTGTGATATTTGTGGCAGAGGATTTACCCAAGAACAGAATTTAGTATCACATAAACGTATACACACGGGTGAACGACCATATTCGTGTGATTATTGTGATAAGTCGTTTTCGAATCGATCCAATTTCGTCCGGCATACACGATTTCATACGACCGGGAAATGTTTTGCATGTGATCTTTGTGATAAAAGTTTTACCCATGAACAAAATTTAGTTAagcataaacgaattcataccggagaaaaaccgtattcatgtgatatttgtagtAAAACATTTGCCCAGCAAAGTAATTTAGTTcgtcataaacgaattcattacGCTAAAAATGAAGGGAATTTTTAG
Protein Sequence: MSLFYNETTQNKSIKEECVDVAVQQRDSIFIKEEYIETEEPKDLILIKEEWIETEEQKDPMFIQEECEQNDAILMKVECTKIEEQKTPTIHSEMIIKDEIIDEPYSCNFCDKRFTVQTCLIEHQRVHAEKKPLSCDLCTKTFQFKSDLVFHKRFHTERTPFSCDICNKSFPQEQNLIVHKRTHTGEKSFSCDICNKSFSQKGNLVTHKRRHTGERPFSCDVCKKKFTVYKFLIQHQRIHTGERPYSCDICDKKFAQEHNLVMHKRIHTGERPYSCDACDKTFIQKQNLISHQRIHTGERPFTCDVCNKSFSNQSNFLYHKRIHTAEKFHACNICSETFNNELNLIQHKRIHTEEPVYSCDVCDQKFPQEEYLIQHKRIHTEEQTEFVQEHRQENRPYSCDVCGKKFVQEHTLIIHKRIHTGERPFSCSICHKKFTMNKFLIQHQRIHTGERSYSCDVCDKKFAQEQNLITHKRVHTGERPYACDICGRGFTQEQNLVSHKRIHTGERPYSCDYCDKSFSNRSNFVRHTRFHTTGKCFACDLCDKSFTHEQNLVKHKRIHTGEKPYSCDICSKTFAQQSNLVRHKRIHYAKNEGNF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -