Basic Information

Insect: Nineta flava
Gene Symbol: -
Assembly: GCA_963920215.1
Location: OY986043.1:85631882-85633771[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 1e-05 0.00038 21.3 0.9 1 23 99 121 99 121 0.98

2 19 1.5e-05 0.00056 20.8 1.5 1 23 127 149 127 149 0.97

3 19 1e-05 0.00038 21.3 0.9 1 23 155 177 155 177 0.98

4 19 5.2e-06 0.00019 22.2 1.9 1 23 183 205 183 205 0.98

5 19 6.4e-06 0.00024 21.9 1.0 1 23 211 233 211 233 0.98

6 19 0.17 6.4 8.0 4.5 1 23 239 261 239 261 0.96

7 19 0.00072 0.027 15.5 0.2 1 23 267 289 267 289 0.97

8 19 1.5e-05 0.00055 20.8 3.5 1 23 295 317 295 317 0.98

9 19 5.4e-06 0.0002 22.2 1.4 1 23 323 345 323 345 0.98

10 19 5e-06 0.00019 22.3 2.8 1 23 351 373 351 373 0.97

11 19 6.5e-08 2.4e-06 28.2 1.0 1 23 379 401 379 401 0.97

12 19 2.5e-05 0.00092 20.1 0.3 1 23 407 429 407 429 0.98

13 19 1.8e-07 6.6e-06 26.8 0.8 1 23 435 457 435 457 0.97

14 19 1.4e-05 0.00053 20.8 1.8 1 23 463 486 463 486 0.97

15 19 9.2e-07 3.4e-05 24.6 1.3 1 23 492 514 492 514 0.98

16 19 4.5e-06 0.00017 22.4 0.9 1 23 520 542 520 542 0.98

17 19 0.013 0.47 11.6 2.5 3 23 547 567 546 567 0.98

18 19 6.8e-05 0.0025 18.7 1.2 1 23 573 596 573 596 0.97

19 19 5.8e-08 2.1e-06 28.4 1.0 1 23 602 624 602 624 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	1e-05	0.00038	21.3	0.9	1	23	99	121	99	121	0.98
2	19	1.5e-05	0.00056	20.8	1.5	1	23	127	149	127	149	0.97
3	19	1e-05	0.00038	21.3	0.9	1	23	155	177	155	177	0.98
4	19	5.2e-06	0.00019	22.2	1.9	1	23	183	205	183	205	0.98
5	19	6.4e-06	0.00024	21.9	1.0	1	23	211	233	211	233	0.98
6	19	0.17	6.4	8.0	4.5	1	23	239	261	239	261	0.96
7	19	0.00072	0.027	15.5	0.2	1	23	267	289	267	289	0.97
8	19	1.5e-05	0.00055	20.8	3.5	1	23	295	317	295	317	0.98
9	19	5.4e-06	0.0002	22.2	1.4	1	23	323	345	323	345	0.98
10	19	5e-06	0.00019	22.3	2.8	1	23	351	373	351	373	0.97
11	19	6.5e-08	2.4e-06	28.2	1.0	1	23	379	401	379	401	0.97
12	19	2.5e-05	0.00092	20.1	0.3	1	23	407	429	407	429	0.98
13	19	1.8e-07	6.6e-06	26.8	0.8	1	23	435	457	435	457	0.97
14	19	1.4e-05	0.00053	20.8	1.8	1	23	463	486	463	486	0.97
15	19	9.2e-07	3.4e-05	24.6	1.3	1	23	492	514	492	514	0.98
16	19	4.5e-06	0.00017	22.4	0.9	1	23	520	542	520	542	0.98
17	19	0.013	0.47	11.6	2.5	3	23	547	567	546	567	0.98
18	19	6.8e-05	0.0025	18.7	1.2	1	23	573	596	573	596	0.97
19	19	5.8e-08	2.1e-06	28.4	1.0	1	23	602	624	602	624	0.98

Sequence Information

Coding Sequence: ATGGCAAATAATTCATTTCATGATGAAAATAAACCTTTGTTTATCAGTGTGGAAAACATTAAACAcgaaaatgaattaataattaaagaggAAATCTTAGAAGAAAGTATTCCAATAGATTATGAAGAAATACACCCAATCGAACAAATTTTCACAGCCAATTATGAAGACATTAAACTTGAACAACAGTTAAatacagaaataataattaaggaAGAAAAATTCGATGAAAATGTTTCAGAACAACAAACTCTTCTTAAAGATAACCGTTTATCATGTGATGGAGACAAACGTTTTTCAtgtaatgtttgtgataaaatatttcaatatgcaaGTCAATTAAATAGACATAAACAAATTCACACAAgtaaaaaaccattttcgtgtgatttttgtgataaaacatttattcaacAATTCAATCTAGATCGACACAGACTAATTCATACGGGTGAAAAGCCATTtacatgtgatatttgtaacaAAGCATTTAATGCACGAAGCACTTTGAATCAACATAAACGCATTCACACTGGTgaaaaaccatattcatgtgatatttgtaacaATACCTTTCGAACACAAAGCACTTTGAATCAACATAAACGTATTcacaccggagaaaaaccattttcatgtgatatttgtaatgaatCATTTAAGCAACAAAACAGTTTAATTTGGCATAAACGAAATcacaccggagaaaaaccattttcatgtgatatttgtaatgaatCATTTCATCAGGAAAACAGTTTAATTTGTCATAAACGAAATCACACCGAAggaaaatcattttcatgtgatatttgtgatgaAACATTTAATCGGGAAAGcattttaattcaacataaacaaaTTCACATTGGAGAACAATCTttctcatgtgatatttgtggtaAAAAATTTAGTCAACAAAGACCTTTAATGCGGCATAAACGACATCACAATGTACCCaaaccatattcatgtgatgtttgcaataaattatttattacgcCAAGTCACTTGGTGCGACATAAACGTATtcacacgggagaaaaaccttttacgtgtgaatattgtgataaaacttttaatatgcGGAGTAATTTAACGACACATAAACAATTACACTCCGGGGAAAAACCATTTGCATGTGATATTTGCGATAAAACTTTTACGCAACAAAGCAGTTTAACGGTTCATCAACGCTATCACACGGGTGATAAACCATATGCATGTGATCTTTGcgataaatcatttattatgcCCAGTTTTTTAGTGCGACATAAACGTATTCATACGGGTGAAAAACCGTTTGCATGTGataattgtgataaaacatttacgcaACAAAGCTacttaaatatacatttacGAATACACGCCGGGGACAAAcgtttttcatgtgatatttgcgagaaaacattttttattcaaagtaatttaaataaacataaacgtCGTATTCACATGCGAGAAAAAcgtttttcatgtgatgattgtgataaagCATTTTTTAATCGTAGTGATTTGTTAAGCCATAGACGAACTCATTCCGATGAGAAACGTTTTGCATGtaatgattgtgataaaacctTTTTTAATTACGCTGATTTGGTAAGTCATAGACGAACACATTCTGAACGagcatgtgatgtttgtgataaagtATTTCAATGTGAAAgtcatttaattcaacataaacgtaTTCATACGGGTGAGaagccattttcatgtgatatttgtaacaTGGCATTTAATTTACGAAGTACTTTGAATAAACATAAACGTCGTATTCATgcaggagaaaaaccatttccatgtgatatttgtaataaaatgtttagTCAGCAAAGCGATTTAACTCGACACAAACGGATACATGAAAAAGAGACGTTATAG
Protein Sequence: MANNSFHDENKPLFISVENIKHENELIIKEEILEESIPIDYEEIHPIEQIFTANYEDIKLEQQLNTEIIIKEEKFDENVSEQQTLLKDNRLSCDGDKRFSCNVCDKIFQYASQLNRHKQIHTSKKPFSCDFCDKTFIQQFNLDRHRLIHTGEKPFTCDICNKAFNARSTLNQHKRIHTGEKPYSCDICNNTFRTQSTLNQHKRIHTGEKPFSCDICNESFKQQNSLIWHKRNHTGEKPFSCDICNESFHQENSLICHKRNHTEGKSFSCDICDETFNRESILIQHKQIHIGEQSFSCDICGKKFSQQRPLMRHKRHHNVPKPYSCDVCNKLFITPSHLVRHKRIHTGEKPFTCEYCDKTFNMRSNLTTHKQLHSGEKPFACDICDKTFTQQSSLTVHQRYHTGDKPYACDLCDKSFIMPSFLVRHKRIHTGEKPFACDNCDKTFTQQSYLNIHLRIHAGDKRFSCDICEKTFFIQSNLNKHKRRIHMREKRFSCDDCDKAFFNRSDLLSHRRTHSDEKRFACNDCDKTFFNYADLVSHRRTHSERACDVCDKVFQCESHLIQHKRIHTGEKPFSCDICNMAFNLRSTLNKHKRRIHAGEKPFPCDICNKMFSQQSDLTRHKRIHEKETL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -