Basic Information

Insect: Nineta flava
Gene Symbol: -
Assembly: GCA_963920215.1
Location: OY986040.1:141710694-141712937[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.0041 0.15 13.1 1.1 2 23 50 71 49 71 0.94

2 20 1.3e-05 0.00049 20.9 5.1 1 23 78 100 78 100 0.98

3 20 1e-05 0.00037 21.3 1.0 1 23 110 133 110 133 0.98

4 20 0.0046 0.17 12.9 0.7 1 23 160 182 160 182 0.97

5 20 0.35 13 7.0 0.1 1 12 187 198 187 201 0.91

6 20 1.1e-07 4.1e-06 27.5 0.6 1 23 281 303 281 303 0.97

7 20 8.6e-05 0.0032 18.4 0.6 1 23 309 331 309 331 0.97

8 20 4.9e-07 1.8e-05 25.4 1.3 1 23 348 370 348 370 0.97

9 20 7.9e-06 0.00029 21.6 0.5 1 23 374 396 374 396 0.98

10 20 1.2e-05 0.00044 21.1 1.2 1 23 417 440 417 440 0.96

11 20 4e-05 0.0015 19.4 1.9 1 23 446 468 446 468 0.98

12 20 2.1e-05 0.00079 20.3 0.9 1 23 474 496 474 496 0.98

13 20 5.8e-06 0.00022 22.1 1.4 1 23 502 524 502 524 0.98

14 20 8.3e-07 3.1e-05 24.7 0.5 1 23 530 552 530 552 0.98

15 20 2.7e-05 0.001 20.0 5.2 1 23 558 580 558 580 0.97

16 20 1.6e-05 0.00059 20.7 0.7 1 23 586 608 586 608 0.99

17 20 4.9e-05 0.0018 19.1 1.6 1 23 614 636 614 636 0.98

18 20 6.2e-08 2.3e-06 28.3 2.3 1 23 642 664 642 664 0.99

19 20 2.5e-05 0.00092 20.1 3.1 1 23 670 692 670 692 0.99

20 20 0.00081 0.03 15.3 0.2 1 23 698 721 698 721 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.0041	0.15	13.1	1.1	2	23	50	71	49	71	0.94
2	20	1.3e-05	0.00049	20.9	5.1	1	23	78	100	78	100	0.98
3	20	1e-05	0.00037	21.3	1.0	1	23	110	133	110	133	0.98
4	20	0.0046	0.17	12.9	0.7	1	23	160	182	160	182	0.97
5	20	0.35	13	7.0	0.1	1	12	187	198	187	201	0.91
6	20	1.1e-07	4.1e-06	27.5	0.6	1	23	281	303	281	303	0.97
7	20	8.6e-05	0.0032	18.4	0.6	1	23	309	331	309	331	0.97
8	20	4.9e-07	1.8e-05	25.4	1.3	1	23	348	370	348	370	0.97
9	20	7.9e-06	0.00029	21.6	0.5	1	23	374	396	374	396	0.98
10	20	1.2e-05	0.00044	21.1	1.2	1	23	417	440	417	440	0.96
11	20	4e-05	0.0015	19.4	1.9	1	23	446	468	446	468	0.98
12	20	2.1e-05	0.00079	20.3	0.9	1	23	474	496	474	496	0.98
13	20	5.8e-06	0.00022	22.1	1.4	1	23	502	524	502	524	0.98
14	20	8.3e-07	3.1e-05	24.7	0.5	1	23	530	552	530	552	0.98
15	20	2.7e-05	0.001	20.0	5.2	1	23	558	580	558	580	0.97
16	20	1.6e-05	0.00059	20.7	0.7	1	23	586	608	586	608	0.99
17	20	4.9e-05	0.0018	19.1	1.6	1	23	614	636	614	636	0.98
18	20	6.2e-08	2.3e-06	28.3	2.3	1	23	642	664	642	664	0.99
19	20	2.5e-05	0.00092	20.1	3.1	1	23	670	692	670	692	0.99
20	20	0.00081	0.03	15.3	0.2	1	23	698	721	698	721	0.95

Sequence Information

Coding Sequence: atgtcgaATAATACTCTAAATTTTAGTGAAGCACATATTAAAATGGAACAGGAATTACAACCAGAAACAGAATTAGTAGTTAAGGAAGAACTATGGGATGACAGTGTTTCAGTGGAACTTCAACCAATTCAAAATGAAGACAAACTTATGTGTGGAATTTGTGCTAAAACATTTACCACAAAAATCACTTTAATTGAGCATAAATGTGAGCATAGAAACGAGAAAAGGCGTTTCTCATgtaatatttgtgataaaaaatttttcagacGAGCTCATTTACGTGACCATAAACGTACTCATTcccaaaataaaaaagataaagcACCGTTCTCATGTGATttatgtgataaaatatttactcaaCAAGCCAGTGTAAATCGGCATAAACGAACACTACATCCCGGAGAACAATCATCAGATTCAATGAACACGGAATTGAAGCCAATTGAAGATAAAAAAATCGATACTAATGGATCGTTTTCATGCGATATTTGCGAACAAATGTTTGAATCAGAATTCAATTTCGCTACACATAAACAACTCCATGCTGACGAGTCTTTTTCCTGTGATGTTTGTGAAAAAGCCTTCACCCATTTAATTgagcataaaattttgaaaattgaagaTAAACCGTTATACATTAAAGTGGAAAAACAATTTCATACAGAATTCATCCTTAAAGAAGAAATACTGGATGAATGTGTTTTAGTGGAACCAGaagtaattcatactgatgaaaaacatttttcatatgaTTCAGATGGAAATGTTTCTATGGATCGTGAAGATATCTATACTGAAGAACATAAACTTTCGGATGATGATTCTACAGAAAAATCGTtcgcatgtgatgtttgtggtaaAAAATTTCCTTCAAAAGATTATCTGATTAGACATCAACGAACTCACAGCGAAGAAAAACCATTTGCATGTAACGCCTGTGATAAATCGTTTGCTCTGAAAAGATATTTGGTTAAACATCAACGAATTCACATGGATGAAAAATCTTCGTCATCTGATGACGATTctatagaaaaaatgtttgcatgTGATGTTTGCAACAAATCATTTACCCAACAACGGTATTTAAATAAGCATATACTGACACATTCATCTGGTTTTTCCTGTAATATTTGTGGTAAAAAATTTGGTCTTGAAAGTTATTTGGAGCGGCATCAACAAATTCATACCGGTGGTAATGATGATACCATACAAAGTAATCAACCTCCGAAGAATCCAGAAAGACCTTTCGAATGTGATTTATGTggtaaaacatttacaaaaaaaaaatatatgacggAGCATCAGCGGGCAATTCATTCGTTAAAAAAACCGTACCCGTGTAATTATTGTGGCAAACAATTTAGCGCAAGATACTCGTATGTTCAGCATAGAAGACGGCATACCGgtgagaaaccttattcatgtgatgtttgtggtaaAGCATTTCATGCCAAAACAAATCTGGTTAAACATCAACAGATTCATATCGGTGATAAAAGCTTCCCGTGTGAAGTTTGCAACAAAACATTTACGCAGCAACGCTACTTAAATGAGCATAAATTGACGCACACGACAGAACGGTGTttctcatgtgatgtttgtggcaAAACATTTGGTGTGAAAAGTTATTTAGTTCGGCATCAACGAATTCACACCGGCGAAAGACCGTATGCATGTGATATTTGCCCGAAAagattcaatcgacagtgtcatTTACGGCGTCATAAACGGGCGCATACTGGCGAAAAACCGTATAagtgtgatgtttgtgagaaAACATTTACGACAAGGGGTATTTTAAAAGTGCATCAACGAATTCATACCGGCGAGAAACGGTATAAATGTGATCTGTGTGGTAAAATATTTGCACATCGGAATACTTTAGTACAACATTATAAAGCGCATACGGGAGAAAAACCGTATACGtgtgatatttgtaatgaaaGTTTTGCACGTCCAAGTCATTTGCAGCGACATAAGCGGACGCATACGGGCGAGAAACCGTAtacgtgtgatgtttgtgatcgAAAGTTtgcacataaaaataatttaggtCAACATAAAAGAACTCATACCGGAGAAAAACGTTTTCCATGTGATATATGTGGTAAAGGATTTACACGTAGAAAAATATTAGTGGGACATCAACAGAAAGCTCATGGTGTTAGTGAGAAAATTTTgcctttaaataattttgtgttaaaaattgaATCTTCAGATCTTGGAAAAACTGCATATTAA
Protein Sequence: MSNNTLNFSEAHIKMEQELQPETELVVKEELWDDSVSVELQPIQNEDKLMCGICAKTFTTKITLIEHKCEHRNEKRRFSCNICDKKFFRRAHLRDHKRTHSQNKKDKAPFSCDLCDKIFTQQASVNRHKRTLHPGEQSSDSMNTELKPIEDKKIDTNGSFSCDICEQMFESEFNFATHKQLHADESFSCDVCEKAFTHLIEHKILKIEDKPLYIKVEKQFHTEFILKEEILDECVLVEPEVIHTDEKHFSYDSDGNVSMDREDIYTEEHKLSDDDSTEKSFACDVCGKKFPSKDYLIRHQRTHSEEKPFACNACDKSFALKRYLVKHQRIHMDEKSSSSDDDSIEKMFACDVCNKSFTQQRYLNKHILTHSSGFSCNICGKKFGLESYLERHQQIHTGGNDDTIQSNQPPKNPERPFECDLCGKTFTKKKYMTEHQRAIHSLKKPYPCNYCGKQFSARYSYVQHRRRHTGEKPYSCDVCGKAFHAKTNLVKHQQIHIGDKSFPCEVCNKTFTQQRYLNEHKLTHTTERCFSCDVCGKTFGVKSYLVRHQRIHTGERPYACDICPKRFNRQCHLRRHKRAHTGEKPYKCDVCEKTFTTRGILKVHQRIHTGEKRYKCDLCGKIFAHRNTLVQHYKAHTGEKPYTCDICNESFARPSHLQRHKRTHTGEKPYTCDVCDRKFAHKNNLGQHKRTHTGEKRFPCDICGKGFTRRKILVGHQQKAHGVSEKILPLNNFVLKIESSDLGKTAY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -