Basic Information

Insect
Nineta flava
Gene Symbol
-
Assembly
GCA_963920215.1
Location
OY986044.1:11589907-11592060[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 4.2e-05 0.0016 19.4 1.1 1 23 8 30 8 30 0.98
2 19 8.4e-06 0.00031 21.6 0.4 1 23 55 77 55 77 0.97
3 19 1.4e-05 0.00053 20.8 1.9 1 23 83 105 83 105 0.97
4 19 1.7e-05 0.00062 20.6 1.3 1 23 111 133 111 133 0.98
5 19 4.4e-07 1.6e-05 25.6 1.5 1 23 139 161 139 161 0.98
6 19 9.5e-05 0.0035 18.2 3.8 1 23 167 189 167 189 0.98
7 19 1.7e-06 6.5e-05 23.7 2.8 1 23 195 217 195 217 0.98
8 19 0.019 0.71 11.0 0.4 1 23 374 396 374 396 0.98
9 19 1.3e-05 0.00047 21.0 2.6 2 23 403 424 402 424 0.95
10 19 2.2e-05 0.0008 20.3 0.3 1 23 430 452 430 452 0.98
11 19 1.7e-08 6.5e-07 30.0 0.7 1 23 458 480 458 480 0.98
12 19 1.5e-07 5.5e-06 27.1 1.4 1 23 486 508 486 508 0.98
13 19 0.00022 0.0081 17.1 1.6 1 23 514 536 514 536 0.96
14 19 2.5e-06 9.3e-05 23.2 0.5 1 23 542 564 542 564 0.95
15 19 3.1e-05 0.0011 19.8 0.6 2 23 571 592 570 592 0.97
16 19 4e-06 0.00015 22.6 0.5 1 23 598 620 598 620 0.98
17 19 0.00014 0.0053 17.7 0.9 1 23 626 648 626 648 0.97
18 19 6.7e-06 0.00025 21.9 0.8 1 23 654 676 654 676 0.95
19 19 9.6e-05 0.0036 18.2 1.8 1 21 682 702 682 704 0.94

Sequence Information

Coding Sequence
ATGCACACGGGTGAAAAGCCGTATGCATGTGATTTATGCGATAAAACATTTATGCATCAACCCAGTTTAATAAATCATAAACGAGTTCACAGCGGCGAACAACCTGCTTCGAGTGATAGAACATTGGTTAAACGTGAACCGAATTATAGCACCGAGAGACCTTTTGCCTGTGATGTTTGTGGTAAATCAtttgttcaaaaacaaacattaattgAACATAAACGGCTTCATACGGGTGAAAAACCGTTTGCATGTGAGGTTTGTGGTAAAAGATTTGCCCGTCAAAGTTGTTTTGCTAATcacaaacgaattcatactggtgaAAAGCCATTTTCCTGTGAAGTTTGCGGTAAAACGTATACGAATCAAAATAGTATAGTCAAACATAAACGAAcgcatactggagaaaaaccattttcctgtaatgtttgtaataaatcgTTTACGCAAAGAAGCAATTtagttgaacataaacgaatacaCAGAGGAGAAAAACAATTTCCATGTGATATTTGCTGTAAATCGTTTAGTTCAAATAGTTATTTAACCAAACACAAACGAATTCACATTGGGGAAAAACCGtactcatgtgatatttgtaataaaacgtTCACGCACgaatacaatttaattagccacaaacgaattcatactggagaccAGCCGTTTTTAAGCACTCAAACTAATTTAGTTAGCAATAAACCAATTGACACTGGAGAACAACTTTTTTCGAGTGATGTTTGGGATGTAACATTCAGTGAAGAGAATAGTAATGGAGGGGGAGCTGATGACAGTCAAGTAACTTTGTCTAGTCCTTTGTTGCAAGCTCCTGAAACTCCACATGCCTCAATTACCACATCTATCGAAtcttctcctagtagaaatgatGACCCCCAGCCTTTACTCGAAGAATCCGATCGACAGGATCATCTACCGTTTTATATGCCCAATCTGCGGTTTCCCGATTTTCGTGGAGCCGAAGGTACGTTTCCTATATGGATGCGCCAACAAATGGCAGAGATTGTTCATAAAACTTCTACTCAGCCAACGAATTTAGTAAACAAAACTGAGAGTGATCAAACGCAAATTCAGAAGTCCAAACCAATTGAAAAAAAGCTTTATTCGTGTGAGTTTTGTGATGATCTGTTTACCGACAAAGCCACGTTAattgaacataaaaaaattcacgcTGGTGAAAAATCCTTAACGTGTAAGgtctgtaataaaacatttacaaatcaaaCGAATTTAGCTAAACATGAACACGTTCATACCGTAGACAGGcctttttcatgtgaagtttgtgggAAATCGTTTATTAAACGTACCCCTTTACTTGAACATCAACGTATTCACACTGGAGCGCGGCCGTTTTCATGTGACGTATGCGGCAAGACGTTTAGCTCCCGATGGAATTTAACGAAACATATACGAGTtcacacgggagaaaaaccattctcatgtgatatttgtggtaAAACATTCGGTTCAAAATggaatttaactaaacataaacgaactcatactgGAGTTAGACCATATGCATGTGAtgcttgtgacaaaacatttgcCCAAAAACATAGTTTAATTGAGCATAAACGGTTTCATACTGGAGAACAGCTTTTCCtgtgtgatatttgtgataaagtTTTTACACAACAAACAAGTTTGGCTaatcataaacgaattcataaaGAGGAGAAACCagtttcatgtgatatttgtggtaaaatatttaatcagcATGGCAGcttagttcaacataaacgaattcatactggagaaaaaatGTTTCCGTGTTATGTATGTAATAAGACGTTTGCCcagaaaatcaatttaattaatcataCACGAATTCATACAGGGGAAAAACCATTTGCGTGTGGTTTTTGTGAGAAAACGTTTACTAATAGAAACAGTTTAGTTGAACATACACGACTGCATACGGGAGAAAAGCCATTcttatgtgatgtttgtggaAAATCATTTACGCAACGTACAAAATTAGTTGAGCATAGACGAATTCATACTGGGGACAAACCATACGCATGCCCTATTTGTGATAAACGATTTGCTGTAAATCGTGATTTAACTAGGCATAAACGATGccatactggagaaaagccTAGATTTAAAACGTTagcattaatataa
Protein Sequence
MHTGEKPYACDLCDKTFMHQPSLINHKRVHSGEQPASSDRTLVKREPNYSTERPFACDVCGKSFVQKQTLIEHKRLHTGEKPFACEVCGKRFARQSCFANHKRIHTGEKPFSCEVCGKTYTNQNSIVKHKRTHTGEKPFSCNVCNKSFTQRSNLVEHKRIHRGEKQFPCDICCKSFSSNSYLTKHKRIHIGEKPYSCDICNKTFTHEYNLISHKRIHTGDQPFLSTQTNLVSNKPIDTGEQLFSSDVWDVTFSEENSNGGGADDSQVTLSSPLLQAPETPHASITTSIESSPSRNDDPQPLLEESDRQDHLPFYMPNLRFPDFRGAEGTFPIWMRQQMAEIVHKTSTQPTNLVNKTESDQTQIQKSKPIEKKLYSCEFCDDLFTDKATLIEHKKIHAGEKSLTCKVCNKTFTNQTNLAKHEHVHTVDRPFSCEVCGKSFIKRTPLLEHQRIHTGARPFSCDVCGKTFSSRWNLTKHIRVHTGEKPFSCDICGKTFGSKWNLTKHKRTHTGVRPYACDACDKTFAQKHSLIEHKRFHTGEQLFLCDICDKVFTQQTSLANHKRIHKEEKPVSCDICGKIFNQHGSLVQHKRIHTGEKMFPCYVCNKTFAQKINLINHTRIHTGEKPFACGFCEKTFTNRNSLVEHTRLHTGEKPFLCDVCGKSFTQRTKLVEHRRIHTGDKPYACPICDKRFAVNRDLTRHKRCHTGEKPRFKTLALI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-