Nlug000915.1
Basic Information
- Insect
- Nilaparvata lugens
- Gene Symbol
- stc
- Assembly
- GCA_014356525.1
- Location
- chr3:73297207-73320373[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2 2.5e+04 -4.1 1.6 15 19 372 376 371 376 0.81 2 15 0.07 8.7e+02 0.5 0.4 4 10 405 411 404 411 0.95 3 15 1.8e-07 0.0023 18.4 13.2 4 18 426 440 424 441 0.94 4 15 1.4e-06 0.018 15.5 8.4 1 19 478 496 478 496 0.91 5 15 1.9e-05 0.24 11.9 14.3 1 19 536 554 536 554 0.94 6 15 0.21 2.6e+03 -1.0 0.8 5 10 585 590 585 592 0.95 7 15 3.3e-08 0.00041 20.8 14.8 4 18 603 617 596 618 0.86 8 15 2 2.5e+04 -4.6 1.7 6 10 648 652 648 652 0.95 9 15 0.0011 14 6.3 7.7 1 11 658 668 658 670 0.96 10 15 1.3 1.6e+04 -3.5 0.8 5 10 674 679 672 680 0.58 11 15 2.9e-11 3.7e-07 30.5 11.1 1 19 685 703 685 703 0.98 12 15 2 2.5e+04 -4.2 0.9 6 10 732 736 732 737 0.75 13 15 2 2.5e+04 -5.4 8.2 10 18 750 759 739 760 0.83 14 15 1.2e-05 0.15 12.6 14.8 1 18 796 814 796 818 0.88 15 15 1.2e-05 0.15 12.6 13.1 1 16 825 839 825 844 0.91
Sequence Information
- Coding Sequence
- ATGTCGAATTGGACCAGGTCTTATAACCCTGGGAATCAAAATGGTAGCTATTATAGAACACAGCAGGATCAGCCCAACGCCTCAATGTCAACAGAGGCGAGTTGGCAGTATAATCAACACCTTTCAAACAGCCAGGTGACACATGATGAACAACAGAGAATGAATGGTTCTATTGGAAATGAACATAATGCTGACTTGATTCAGTACTGTAATGGGCTCCTGGACAAGGATATCTTGGAAAGAGCAGCTAACTCAAATTTGGTAGCCACAGCTGGCGAGTTTGTACCATCTGGACAGTACTCTTACTATTACGTTCAAAACCCTGTTCAATCATTGGAAGTAAATAGCAACGCAAATTCTTTACTAGAACTGGATGAACCTAGACAGTCATCATCAAACTTTCCAACTAATCCATCCTCTACGTTAGGTCAGAGCACAACCTTCTTTCAACAACAGCAACACACTTCCAATCAACGATCTTATAACAGTCGTTACGACGGCTCATCATCTTACCATTCAAAGGGGTCTCAAAGGAACGGAAAACCTAGAGATAAAAATAGAAACAGCTACCAACATGCTGGCTCAGGTCGTTCATTTGATAGAGGGTCTGGTTCCAACCAGTCATCTCACAGTAATGATTCTCTGATGGAGGAAATGAAAAGTGAGGGTCGGAGAAAACTCTTGGCAGAAGCTGCAGCTATTCTTGCCTCTAATTCGGCACGATCTAGTGGCAATTATACTGAACCAGTTCATCCAGATTCTTTTGCAAATGGAGGAAATTCCTCGAAGTCACAGATGCGTAAGAAACAAAATTCACATAAAGGGAGTGATCAGTATTTCAATAGGGATATGAAGTCTTCTGGACATGATAGTTATAGAGGAGCTAGTTTCAAAAAGGACCATGGGTCGAACTCAACAAATGAAGATCACAAAGTGTCTCAAAGAGATAGGCTTATTGAACAGCTGAACAGGGGCATACTAGAATGTCTTGTCTGCTACGACAGAGTGAGACAGCATGAACCCGTTTGGAACTGCGCCAATTGTTATCACGTTCTGCATCTGCGTTGCATCATCAAGTGGGCTCAATCATCACGTGCAGAGAACGGATGGCGTTGTCCTGCCTGTCAGAACGTGACGGACAAAGTGCCGCAGATCTACTTGTGCTTCTGCGGCCAGATCACTGAGCCCGAGTGGAACCGCAACGATACAGCGCACTCTTGTGGCGAGGTCTGCAACAAACCCAAACCGAACACTAGCGAGTTCTTCGAGTGCCTGCACCGCTGCACCCTGCTCTGCCATCCGGGTCCTTGTCCGCCCTGTGTTGCCATGGTTGACAGAAAGTGTGGCTGTGGTAAAACCAGCCAATTAGTCCGGTGTGGACAAAATACGAAGACACTCTCATGTGGAGCAGAGTGTGCCAAGGCGTTGTCGTGTAATGTTCATTTTTGTACAAAAATCTGCCATCTAGGAGAATGTGATCCTTGCAAAGTGGTTGTATCTCAAGTTTGTTACTGTGGAGCTGAGAAAAGAGAAGTGCCTTGTGATGTGAAAAGCAACAATGTGTTGAACTACGAGTGCGGTGGTGTTTGCCAGCGCAAGTTGGACTGCAATGAGCATGCGTGCGGTCAGCTGTGTCACCCTGGCTCTTGCGGCGCTTGCCCCTTGGATCCAGCCAACATATCGCATTGTCCTTGTGGCAAAATGAAACTGGGCGATAATGTTGAGCGTACGTCTTGTTTGGATCCCTTGCCTACATGCTCTCAAGTATGTGCAAAACAACTCAAGTGCGGTCAGCCAAGCTCGCCTCACACTTGTAAATCGTTGTGTCATGAAGGGCCGTGTCCGCCTTGTGAGCTGTCAACATTGGTGCGGTGCAGATGTGGCCATATGGACAAGGAAACTCCATGCCAAATCCTAACCACTAAAGCCGATGAAGCTCTGTGCCAACGAAAGTGCACTAAGAAACGCAAATGTGGCAAGCACAAGTGCAACCAGATGTGCTGCATCGAAGTGGACCACGTCTGCCCCATGCCCTGCAACCATCTCCTCACCTGCGGTCAACACCGGTGTGAAGAGCTCTGTCATAAAGGCTACTGCCAGCCTTGCTGGCGCGCTAGCTTCGAAGAGCTGTTCTGCGAGTGTGGCAAGAGCGTGCGGTACCCGCCGGTGCCGTGCGGCGCACGCCGCCCCGTGTGCGACGAGCCGTGCAGCCGACAGCACGCGTGCGACCATTCTGTGCTGCACAACTGCCACGCTGACCCTCAGTGTCCTCCCTGCATTGTCCTCACATCAAAGCACTGCTACGGCAAGCATGAGTTGAGGAAGGCTGTACCGTGCCATGTGGAAGAATTCTCATGCGGATTGCCGTGTGGCAAAGATCTGCCATGCGGTCGTCATAAGTGCATCACCAGCTGTCACAAAGGAGAATGTGTCCAGTCGTGTGTACAACCGTGTGCAAATCCCAGATCCATTTGTGGACACCCCTGTAATGCACCATGTCATGACGGAGAATGCCCTGATACTCTGTGTAAAGTCAAGATTACAGTAACCTGCGCCTGTGGCCATAGAAGCACTTCACGAACATGCTGTGAGAACAATAAAGAGTACCAACGCATTGCCACTTCCATACTCGCATCAAAAATGGCCGAAGTCCAATTGGGAAAATCTATCGATCTGCAGGATATGCAGAAGGTCCACAAGATGAGTTTAAAAACGTTGGAGTGCATTGAGGAATGCCGAGTGATTGATCGCAACCGAAGGTTGAGCATTGGCCTACAAATTCGCAATCCGGACCTCTCAGCCAAATTGACACCACGCTACTCTGATTTTATGCGATCTTGGGGAAAGAAGGATCCAAAGTTTTGCAAGCATGTACATGATAGATTAACTGAACTTGTTCAACTAGCTAAACAGTCAAAACAGAAGAGTCGAAGCTATTCTTTCGAAACTATGAACAGAGAAAAAAGGCAATTTGTTCACGAATATTGTGAACATTTTGGCTGTGAATCAGTTGCTTATGATGCTGAACCGAAAAGGAATATCGTAGCCACTGCTCAACGAGACAAGGCTTGGCTTCCAAGTTATAGCTTACTCGAAGTCTTGCAAAGAGAAAGCGGTCAAAGGAAAGTTCCAGTACCCACAATTAACATGAAAAAAGGACTAACTCAATTATCCGGATCAACTTCAGCTTCTGCATGGTAA
- Protein Sequence
- MSNWTRSYNPGNQNGSYYRTQQDQPNASMSTEASWQYNQHLSNSQVTHDEQQRMNGSIGNEHNADLIQYCNGLLDKDILERAANSNLVATAGEFVPSGQYSYYYVQNPVQSLEVNSNANSLLELDEPRQSSSNFPTNPSSTLGQSTTFFQQQQHTSNQRSYNSRYDGSSSYHSKGSQRNGKPRDKNRNSYQHAGSGRSFDRGSGSNQSSHSNDSLMEEMKSEGRRKLLAEAAAILASNSARSSGNYTEPVHPDSFANGGNSSKSQMRKKQNSHKGSDQYFNRDMKSSGHDSYRGASFKKDHGSNSTNEDHKVSQRDRLIEQLNRGILECLVCYDRVRQHEPVWNCANCYHVLHLRCIIKWAQSSRAENGWRCPACQNVTDKVPQIYLCFCGQITEPEWNRNDTAHSCGEVCNKPKPNTSEFFECLHRCTLLCHPGPCPPCVAMVDRKCGCGKTSQLVRCGQNTKTLSCGAECAKALSCNVHFCTKICHLGECDPCKVVVSQVCYCGAEKREVPCDVKSNNVLNYECGGVCQRKLDCNEHACGQLCHPGSCGACPLDPANISHCPCGKMKLGDNVERTSCLDPLPTCSQVCAKQLKCGQPSSPHTCKSLCHEGPCPPCELSTLVRCRCGHMDKETPCQILTTKADEALCQRKCTKKRKCGKHKCNQMCCIEVDHVCPMPCNHLLTCGQHRCEELCHKGYCQPCWRASFEELFCECGKSVRYPPVPCGARRPVCDEPCSRQHACDHSVLHNCHADPQCPPCIVLTSKHCYGKHELRKAVPCHVEEFSCGLPCGKDLPCGRHKCITSCHKGECVQSCVQPCANPRSICGHPCNAPCHDGECPDTLCKVKITVTCACGHRSTSRTCCENNKEYQRIATSILASKMAEVQLGKSIDLQDMQKVHKMSLKTLECIEECRVIDRNRRLSIGLQIRNPDLSAKLTPRYSDFMRSWGKKDPKFCKHVHDRLTELVQLAKQSKQKSRSYSFETMNREKRQFVHEYCEHFGCESVAYDAEPKRNIVATAQRDKAWLPSYSLLEVLQRESGQRKVPVPTINMKKGLTQLSGSTSASAW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01354312;
- 90% Identity
- -
- 80% Identity
- -