Nlug008293.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nilaparvata lugens
Gene Symbol
nfxl1
Assembly
GCA_014356525.1
Location
chr6:23614912-23633076[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.65 8.1e+03 -2.6 1.1 15 19 179 183 178 183 0.81
2 16 0.088 1.1e+03 0.2 0.8 4 10 214 220 213 220 0.95
3 16 8.1e-08 0.001 19.5 17.3 1 19 228 245 228 245 0.99
4 16 2 2.5e+04 -5.2 3.4 8 13 250 255 249 256 0.71
5 16 1.4 1.7e+04 -3.6 0.5 6 10 271 275 270 276 0.69
6 16 1.7e-08 0.00021 21.7 16.2 1 19 281 299 281 299 0.99
7 16 0.12 1.5e+03 -0.2 1.9 5 10 323 328 323 328 0.95
8 16 2.8e-10 3.5e-06 27.4 10.2 1 18 334 351 334 352 0.98
9 16 2 2.5e+04 -6.5 5.6 15 18 361 364 359 370 0.63
10 16 1.5 1.9e+04 -3.7 0.6 5 10 376 381 376 381 0.74
11 16 2.4e-09 3e-05 24.4 14.9 1 18 387 404 387 405 0.97
12 16 0.28 3.5e+03 -1.4 0.4 1 10 414 423 414 423 0.74
13 16 2 2.5e+04 -4.3 2.3 5 10 428 433 428 433 0.91
14 16 1.6e-06 0.02 15.4 14.6 1 18 439 456 439 457 0.92
15 16 1.8e-08 0.00022 21.6 19.2 1 18 466 483 466 484 0.98
16 16 0.58 7.2e+03 -2.4 0.6 6 10 511 515 510 515 0.89

Sequence Information

Coding Sequence
ATGACTGGAAGAGGTGCACCCAAGTCGAACGCTTGGAAGGATCGTACCAAAATTCAGAATAGTCAGCAGAAAAGAGCAGAGGGGTCGGGCTTGCGTGGAGGATCTGGTAGTCAGCTTGTGAATCTGTCGCAAGCAGAAGAAAAGTTTCTGGCAGCCAAGTCGCGAATGCAGGCAAGCGTGCAGAAACACTTGCATGACGACTACAATTCGTCCTCTGAAGAAGATGAACTTGAAACTGATAATATTCTCAACTCTGTTTTGAAAAACTACTCATCGTTATCAGATGATTCTAATGTTGATCTTGGCAGAACACAGAAATTCCTTGAAGACGCTTTCCAGTCGGGTGCTGCCATATGTCTCATCTGCATTGCTACTGTCAAACGGCCTGATGCTATTTGGAGCTGCACAAAATGCTTCTGCTTTTTCCACGTGATCTGCATACAACGATGGGCGAAGGACAGTGTGACGCATCAGAAGCAGGTGCTGGAAGAAAGGCAACAGGCTCCGCCCATTTGGGACAAACTATCATGGGCATGTCCTAAATGCCGTAACAACTATTCGTCCACTGAAATTCCAAAGGCGTACTTCTGCTTCTGTGGTAACGTGGAAGATCCCGAGTTCCATCCATGGCTAGTGCCGCACTCTTGCGGCGAAACTTGCAACAAGCCGCTGCAGCCATCTTGTGGCCACCAATGTCTGCTACTTTGTCATCCAGGTCCATGCCCACCATGCCCGAAGATGGTGCAGTCGCACTGCCACTGCGGCAAAGCGGCACCACGACCGCAGCGCTGCAGCAACAAGCATTGGTCGTGCGGCGAAACTTGCGGCAAGCTGCTGACGTGCGGCAAGCACACGTGCGACCACTTGTGCCACAGTGGCACGTGCGCTCCCTGTCCTCGCCAGTCCACCCAGAAGTGCCTCTGCCAGCGCAACTCTGCCGTCAGGGAGTGCGCCCAACCTTTCTGGAAGTGCGAACAGGTGTGTGGCAAACCGTTGGCATGCGGCAACCACCGTTGTGAGGTGGTGTGCCACTCGGGCGCATGCGACCAGTGCGCCCTGACGCAGACGCGGCGCTGCCCTTGCGGCAAGTGTGAACATGTGCTGCCCTGCGACCGCGACACGCCCACTTGCGGCGACACTTGCGGCAAGACGCTCGAGTGCGGCCAGCATACCTGCTCCTTGCGCTGTCATACTGGACCCTGTGGACCGTGTCTGGAGCGTGTTGTGAAGACGTGCCGTTGTGGACTGCACTCCAATGAAGTTCCCTGCGCCAAAGAGTACACTTGCGAAACCAAGTGCAAGAAGAAGAAGGACTGTAACCTGCACACCTGCAATCGTAAGTGCTGCGACGGATCGTGCCCGCCGTGCGAGAAGCCATGTGGTAAGCCGCTGAAGTGTGGCAAGCACAAGTGCCAGTCCATCTGCCATCACGGCCCCTGCTACCCGTGCCACCTCACCGATGAGATCCACTGCTGGTGCAAGGCCACCTCCACGCTCGTGCCTTGCAGCATCAACAAGAAGCGCTTCAGCTGCAACAAGCTATGCAAGTCAGTCCTATTTATTTCTTTATAA
Protein Sequence
MTGRGAPKSNAWKDRTKIQNSQQKRAEGSGLRGGSGSQLVNLSQAEEKFLAAKSRMQASVQKHLHDDYNSSSEEDELETDNILNSVLKNYSSLSDDSNVDLGRTQKFLEDAFQSGAAICLICIATVKRPDAIWSCTKCFCFFHVICIQRWAKDSVTHQKQVLEERQQAPPIWDKLSWACPKCRNNYSSTEIPKAYFCFCGNVEDPEFHPWLVPHSCGETCNKPLQPSCGHQCLLLCHPGPCPPCPKMVQSHCHCGKAAPRPQRCSNKHWSCGETCGKLLTCGKHTCDHLCHSGTCAPCPRQSTQKCLCQRNSAVRECAQPFWKCEQVCGKPLACGNHRCEVVCHSGACDQCALTQTRRCPCGKCEHVLPCDRDTPTCGDTCGKTLECGQHTCSLRCHTGPCGPCLERVVKTCRCGLHSNEVPCAKEYTCETKCKKKKDCNLHTCNRKCCDGSCPPCEKPCGKPLKCGKHKCQSICHHGPCYPCHLTDEIHCWCKATSTLVPCSINKKRFSCNKLCKSVLFISL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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