Nlug010600.1
Basic Information
- Insect
- Nilaparvata lugens
- Gene Symbol
- pnr
- Assembly
- GCA_014356525.1
- Location
- chr13:13896889-13923531[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.1e-19 2e-15 56.5 3.8 1 35 65 98 65 99 0.98 2 2 1 5.2e+03 -2.4 0.1 3 10 143 150 142 160 0.77
Sequence Information
- Coding Sequence
- ATGCATTGCTTGTCTGTGGAAAGATTTTCCAACGATTTTCCATCCCTGCCATGCATTGATGTGGCTAGTCCCGGGAACAATGATTACTACAAGGGCTCTTCTACTTATCTACCAACAACTGCTACCACGTATACTCCTCACACCACACGGAATTCCTCATATCCCCATGAGGATAAAACTACCCGGCGACTGTGTAGCAACTGCACCACCAGAGCAACTTCACTGTGGCGACGTAATTCGGTTGGCGAGCCTGTCTGCAATGCATGCGGTCTTTACTACAAGTTGCATGGTGTTAACCGACCAATGGCCATGAAGAAGGATAGCATACAGACAAGGAAACGAAAAGCGAGAGCTGGCTCGAAGGCCGATACTGGCAGTGCTCCTTCCAAAATGATGAAACTGGAGCCGCAATCAGACGTGTACACGGAATGTAGAACCAGCAGCAGCTCCGGTATGATGTCTCATAGCAACAACTCTCCACTACCTTACAGCAACCTGTACAGTAATCAGCATGCGGCATCCACACTCTACTACGACAGTCTCACACTGCCAACTAAACAAGAAACGTCTCCGATCTCAAGCAACGACCAATCCGCGTCTCCACACATTGTGACGCTGGCCAATCAGAAGCCAGAACGCCCTTCAGTCGTGTCTATAGCTTCATTGAAAGAGAAAAAAGTGAGTGTAAAAAGGTGA
- Protein Sequence
- MHCLSVERFSNDFPSLPCIDVASPGNNDYYKGSSTYLPTTATTYTPHTTRNSSYPHEDKTTRRLCSNCTTRATSLWRRNSVGEPVCNACGLYYKLHGVNRPMAMKKDSIQTRKRKARAGSKADTGSAPSKMMKLEPQSDVYTECRTSSSSGMMSHSNNSPLPYSNLYSNQHAASTLYYDSLTLPTKQETSPISSNDQSASPHIVTLANQKPERPSVVSIASLKEKKVSVKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -