Basic Information

Insect: Nilaparvata lugens
Gene Symbol: -
Assembly: GCA_014356525.1
Location: chr3:22022397-22032229[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 8.5e-05 0.013 16.4 2.5 1 23 211 233 211 233 0.99

2 9 0.00028 0.044 14.7 0.7 1 23 276 298 276 298 0.98

3 9 0.21 32 5.7 0.4 3 23 323 344 321 344 0.84

4 9 2.9e-06 0.00044 21.0 0.7 1 23 359 381 359 381 0.98

5 9 7.8e-06 0.0012 19.6 0.3 1 23 388 410 388 410 0.97

6 9 0.004 0.62 11.1 1.8 2 21 417 436 416 437 0.92

7 9 0.17 26 6.0 0.4 1 23 445 468 445 468 0.89

8 9 4.3e-06 0.00067 20.4 0.4 1 23 474 497 474 497 0.95

9 9 0.018 2.8 9.0 0.2 2 23 538 559 537 559 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	8.5e-05	0.013	16.4	2.5	1	23	211	233	211	233	0.99
2	9	0.00028	0.044	14.7	0.7	1	23	276	298	276	298	0.98
3	9	0.21	32	5.7	0.4	3	23	323	344	321	344	0.84
4	9	2.9e-06	0.00044	21.0	0.7	1	23	359	381	359	381	0.98
5	9	7.8e-06	0.0012	19.6	0.3	1	23	388	410	388	410	0.97
6	9	0.004	0.62	11.1	1.8	2	21	417	436	416	437	0.92
7	9	0.17	26	6.0	0.4	1	23	445	468	445	468	0.89
8	9	4.3e-06	0.00067	20.4	0.4	1	23	474	497	474	497	0.95
9	9	0.018	2.8	9.0	0.2	2	23	538	559	537	559	0.94

Sequence Information

Coding Sequence: ATGATGAGGTTGCTTGATTACCCCTTGATGTTTCAGAAAATGAATTTCGAAGAAAGATTACCCAATAAAATTTGCTCATCATGTGTGAAAAAACTTGATGAGTTTTACATATTCAGTTCTGAATTCGAAATCAATCAAGAAAAACTTGAACAAAGCTCTATAAAGACAGGATTGTTGATAGAAAATATTAATTCAGAGCAAGAGCGAGACCACAGTACAGCGGCAAGTGGGATGCAATCCGGCCATAAACAACTGGTACTCAAACAACACGTCTTCATAACAGAAAAATTGAAGGTCTTAGCTATTAAAGAGGAAAATTATGAAAAGGTTGCTTCAAATACCTTGACGGAAGTTATCGAACGCATTCAGAATTCTTCAGACGTTCTTGTCTTAGCTATTAAAGAGGAAAATTATGAAAAGGTTGCTTCAAATACCTTGACGGAAGTTATCGAACGCATTCAGAATTCTTCAGACGTTCTTAAAAATGAAAAAGAAGAGGAGGAAACAGAAAATATGAAGAATAAAAAAGTGACAAGTCATCTCGAAAAAACAGTACCGGTAGTTAATGATCCTCTTGGTGAGCCAAAGAATGTTGATTATAAACCTACTCAACGTGTGAAAGGTAGCATTTATACATGCCACATATGTTCATCTACATTCAATAATGAATATGAAGTTCAAAAACACTTAAAGATTCATTCAAATTACATCAACCACATTAAAAGAGAACTTCGAAACTGCAATGGAATTTCAACCGCGAGTTCCGAATTTTTGCACTCACAATCAGGAGGAATTACAAGTAATGGGACACTCAATGATTTTCAATATCAGTGTTATTTATGTCCGAGTATTTTCAACTCTCAAGACCTTTTGTATACGCACATAAAGCAGCATGAGATAGAAAATAGTATCACTAATAAAAATGAAATCGAATGTTTGAGCTCAAACATCAGCACCAAGATTATCTGTAAATTATGTAAGAAAGGATTCTTCACTACATCTAGATATGATCTGCATGTGATTGAAGATCATGATCCTGAGAAGGAAGTTTCACCAAGGAGGAGAGGACGAATATTCCAATGCAACGACTGTAATAAAATATTCAAAAGTAAGGTGGACATAACGAGGCATGTGTCAATCCACCTGAAACGGAAGAGTGCTCATGTTTGCTCAGTTTGTGGCAAGGAATATGTATTTCCGGTTGCTTTGAAGAATCACATGCTTAAACATGACCCAAACTATAAAATAGAATGCCCAATGTGCTTAGAGAGATTCAGCAAACGTAAAGAACTCAAGACTCATAAATGCCGCAGTGTCCCTCTAATCACAGTATTCAAGTGTAACCCTTGTAGCCTTGAATTTTCCTCGCTCAATTTTTTGAGAATTCATGAAGATCTCGATCATGGAATTGGCGCACCGTATACTTGCGATTATTGTACAAGAACATTCACATCGAATGAAGGTCTCATGGCACACGTGAATGAGAATCATTTTGAAGTCAATGGCTGCCCTGAAATGAGCATGAAAATTGAAAATACTGATGATATAAAAAAGAAGGAGACCAATGATTTGCTATTTGATGAGGAGCTTGCCACAAATTTGGAAATTCTAATGTGCACCCTATGTGGAGCATTGTGCATAACTAATGAAGAATTCCAGGAACATATGGCAGGCCATATAATTATATGA
Protein Sequence: MMRLLDYPLMFQKMNFEERLPNKICSSCVKKLDEFYIFSSEFEINQEKLEQSSIKTGLLIENINSEQERDHSTAASGMQSGHKQLVLKQHVFITEKLKVLAIKEENYEKVASNTLTEVIERIQNSSDVLVLAIKEENYEKVASNTLTEVIERIQNSSDVLKNEKEEEETENMKNKKVTSHLEKTVPVVNDPLGEPKNVDYKPTQRVKGSIYTCHICSSTFNNEYEVQKHLKIHSNYINHIKRELRNCNGISTASSEFLHSQSGGITSNGTLNDFQYQCYLCPSIFNSQDLLYTHIKQHEIENSITNKNEIECLSSNISTKIICKLCKKGFFTTSRYDLHVIEDHDPEKEVSPRRRGRIFQCNDCNKIFKSKVDITRHVSIHLKRKSAHVCSVCGKEYVFPVALKNHMLKHDPNYKIECPMCLERFSKRKELKTHKCRSVPLITVFKCNPCSLEFSSLNFLRIHEDLDHGIGAPYTCDYCTRTFTSNEGLMAHVNENHFEVNGCPEMSMKIENTDDIKKKETNDLLFDEELATNLEILMCTLCGALCITNEEFQEHMAGHIII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -