Nlug020319.1
Basic Information
- Insect
- Nilaparvata lugens
- Gene Symbol
- -
- Assembly
- GCA_014356525.1
- Location
- chr5:76949277-76976391[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.011 1.7 9.7 1.0 1 21 43 63 43 64 0.96 2 11 0.00028 0.043 14.7 2.3 1 23 72 95 72 95 0.95 3 11 0.00022 0.034 15.1 3.0 1 21 141 161 141 162 0.96 4 11 0.0014 0.22 12.5 1.7 1 23 170 193 170 193 0.96 5 11 7e-05 0.011 16.6 2.4 1 21 260 280 260 281 0.96 6 11 9.5e-05 0.015 16.2 1.2 1 23 289 312 289 312 0.97 7 11 0.011 1.7 9.7 4.8 1 21 358 378 358 379 0.95 8 11 0.0014 0.22 12.5 5.2 1 23 387 410 387 410 0.96 9 11 0.011 1.7 9.7 1.6 1 21 485 505 485 506 0.94 10 11 2.6e-05 0.0041 17.9 1.1 1 22 548 569 548 569 0.94 11 11 0.0029 0.46 11.5 2.6 2 23 578 600 577 600 0.96
Sequence Information
- Coding Sequence
- ATGGCTCTGATTAGAAATTATGCATTTCTGAACCCTCTGCAAACATCCTACGGAGAAGTTGAAGATCACGAACTGAAAGGTGCAGCATTCTTGGATGAGGGATTAATTAGGGAATTGGATGGAAAGTTCCGCTGTGAAAAATGCCTCAAAATCTACAAAAACCGTCGTTCTGTTGTCACTCATCTCCGGTATGAATGCGGTGTGAAGCCACAATTTCAATGCTCGTACTGTCCCCACAAAGCCAAATTAAAGTCGAATCTTACAAAGCATATGATAGCAAAGCACAGTGACCTATTACATGATTGTGTTCTAGCTTTTTTGGATCCTCTGTGTACGTCTTATCGTGCACCTCACGATAATGAACAATTAGAGGGAGTCGTATTGATCAATGAAGAATTTCACAAGGGATTGGATGAAAACTACCGCTGTGAAAAATGCTTCAAAACCTACAAACATCGTGGGAGTCTCACTGTTCATCTCAAGTTTGAATGCGGTTTAGAACCGAAATTCAAATGTTCTTATTGTCCCTACAAAGCCAAATTGAAGAATAATCTCACAAAGCATGTAGCAAGACGACACACATTTTCGGACCCTCTGCAAATGTCTTACGAAATACTTGAAGACGACGAGCATTCCCGAGGAGCAGGATTGATCAGTGAAGCTTTCTTGGACCCTCAGCAGTCGTCTTACCATGCATTTGGAAAGTTGTTCAGAGACAAAAACAGGATACAAGCGACAGAACTGATGAATAGAAAATCATTCGATGAAGTGCATCCATTTCGCTGTGAGAAATGTAACAGAACTTACAAGTATAGTTGGAACCTGAAAAGTCATCTAAAGTTTGAGTGTGGAGTGGAACCGAAATTTCAATGCACTTACTGTCCCTACAGAGCCAAATTGAAAAATAACCTGAAAAAGCATATGATTATACAACACAGCAAGCTATATTCGGAGTCTGACTTTGTGGACCATCTGGAACCGTACTATGACTCCACATCATCAAAAATCACGCATGCGGAAACTGGATCAATGATGTTGCAACGTCAAGCTAATGGCGTCAGAATGGAAAGTTTTTGCTGCCAAAGATGCAACCGTAGCTATAAATACGCCAGGAATCTGCAGTATCATTTGAAGTTTGAATGTGGCATAACACCTAAGTTTCATTGCAAACAGTGTCCTTATAGAGCAAAACAAAAGTCTCATCTGAAAAGTCACATTATCTCAAGGCACACGGACATCATTCTCAATCCCAATCTTGTGCACTATCAAACTGAAATTAGATTTGTCGGAGATAAATCGAGAATAATTCTAATTGAATTGCCGATTGGAATAATTCATATTTTTACCCTGAATAATCCGGAATATGAAAACCCTGATGATGATAGTAATAGAGGAGATTTGAATGTTTCAGATTGGTCGATTTTGTTTGAGCGCAAGATGTCTGATGGCGCATTTGCGTGCGTGCGTTGCAGTCGAAGATACAAGTACAAGAAAACTCTGGTGAGACACCTGAAGTACGAGTGTGAATTGATAGAGTACGCACTGCGCGTGGGCTCGAGCCGCTTCGACAAGAGAATGCTGCTGTCAGCTGCCGAGGACTCGCTGGAACGCAGGCTGTGTCCCTCGCAGCTGCCTGGTGCGCATGCGTGTCCCACCTGTCACCGCATCTACACCTACAAGAACAACCTTATGCGTCACATTCGGGTCGAGTGCGGCAAACAGCCCAGTCAGATGTGTCCCTACTGCACGTATCGCAGCAAGCACAAGGGCGACGTTCTGCGTCACCTCAAAACCAGGCACCGCGATTGTACAGATGGAAACACACCAGAGACAACCATGCGAAGAATGAGTGCGGACAAGATCCCAGGTTCCAATGTCCCCTGTGTCCGCATCGATCCAAGAGGGCTCCCAATCTCAGAATACACATTTATCTCAAACACAACAAGAGAATATGAACATTTCAATCTTTCAAAATGCATGAATACTTATCCAATTATTCCACCACCTCCGGCTGAAAGAATTAATCAGGAAGAATTTGAAAATATTTTTGTGAAACAAGAAATAATATTTGATGATAATTTCACTAGTTCGACATATTCTCACGATTTCCTTCTAGAATTGAGTGGAAATTCCGATTCGATTTCAGGGGTATCTGGCACTGCTGATAAAACTCCAATATCTTCCGATATAACTAAACCACAAACATCTGAAAAAATTGAACCTCCTTGTTCATTTCAAACTTCATCTCATGAAACTAGAAATGCTGAGAAAAATCAGGTAGAGAAGAGATCTGGTAGAAATCGGGAAGTTTGTGGCAAAGTTTGTTTGAAGGGAAAATTTGGTGATAAGGGTATCCAAACTCCACAATCGGTTGATAATATGCAACCAGGAACATCTGGAAATGTTGGGGCTCCTTTTTCAATAAAAAATAGGCTCCCATCTGAAAAAACTAGCAATGTTGAGGTGCAAAAGAGTAATTTTGAAAAACCGAAAGCTTGCAGTAAAACTAATTTGAAGGAAAAATTCGTTAACAAAGCTATCAAAAATCCACAAGCTCTTGTTCATCCAGTAGTGCCTGAAAATAATAGATCATCACATTCATTACAAATTATACCACATGAAAAAAGCAATGCTCAGAGTAATCAGATAGAGAAGGGATATGTTGAAAACTCAAAAACATGTGAAACAATAATAGTTTGA
- Protein Sequence
- MALIRNYAFLNPLQTSYGEVEDHELKGAAFLDEGLIRELDGKFRCEKCLKIYKNRRSVVTHLRYECGVKPQFQCSYCPHKAKLKSNLTKHMIAKHSDLLHDCVLAFLDPLCTSYRAPHDNEQLEGVVLINEEFHKGLDENYRCEKCFKTYKHRGSLTVHLKFECGLEPKFKCSYCPYKAKLKNNLTKHVARRHTFSDPLQMSYEILEDDEHSRGAGLISEAFLDPQQSSYHAFGKLFRDKNRIQATELMNRKSFDEVHPFRCEKCNRTYKYSWNLKSHLKFECGVEPKFQCTYCPYRAKLKNNLKKHMIIQHSKLYSESDFVDHLEPYYDSTSSKITHAETGSMMLQRQANGVRMESFCCQRCNRSYKYARNLQYHLKFECGITPKFHCKQCPYRAKQKSHLKSHIISRHTDIILNPNLVHYQTEIRFVGDKSRIILIELPIGIIHIFTLNNPEYENPDDDSNRGDLNVSDWSILFERKMSDGAFACVRCSRRYKYKKTLVRHLKYECELIEYALRVGSSRFDKRMLLSAAEDSLERRLCPSQLPGAHACPTCHRIYTYKNNLMRHIRVECGKQPSQMCPYCTYRSKHKGDVLRHLKTRHRDCTDGNTPETTMRRMSADKIPGSNVPCVRIDPRGLPISEYTFISNTTREYEHFNLSKCMNTYPIIPPPPAERINQEEFENIFVKQEIIFDDNFTSSTYSHDFLLELSGNSDSISGVSGTADKTPISSDITKPQTSEKIEPPCSFQTSSHETRNAEKNQVEKRSGRNREVCGKVCLKGKFGDKGIQTPQSVDNMQPGTSGNVGAPFSIKNRLPSEKTSNVEVQKSNFEKPKACSKTNLKEKFVNKAIKNPQALVHPVVPENNRSSHSLQIIPHEKSNAQSNQIEKGYVENSKTCETIIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -