Nlug002102.1
Basic Information
- Insect
- Nilaparvata lugens
- Gene Symbol
- Zfy1
- Assembly
- GCA_014356525.1
- Location
- chr5:50330714-50351532[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.6e-05 0.004 18.0 3.0 1 21 36 56 36 57 0.96 2 13 1.8e-05 0.0029 18.4 2.1 1 21 62 82 62 83 0.95 3 13 0.97 1.5e+02 3.6 0.7 1 23 91 114 91 114 0.77 4 13 0.0022 0.34 11.9 1.3 3 22 179 198 178 198 0.95 5 13 0.001 0.16 13.0 0.1 1 21 206 226 206 227 0.95 6 13 0.00017 0.026 15.4 3.4 1 21 274 294 274 295 0.95 7 13 0.0007 0.11 13.5 0.9 1 23 303 326 303 326 0.94 8 13 0.014 2.2 9.4 1.3 1 21 359 379 359 380 0.96 9 13 0.097 15 6.7 7.5 1 23 388 411 388 411 0.97 10 13 0.041 6.4 7.9 1.3 2 21 417 436 416 437 0.93 11 13 0.011 1.8 9.7 4.1 1 23 445 468 445 468 0.96 12 13 0.00022 0.034 15.0 0.6 1 21 494 514 494 515 0.94 13 13 0.0049 0.77 10.8 3.9 1 23 523 546 523 546 0.96
Sequence Information
- Coding Sequence
- ATGAACGTTGAATGGAGCAGCATTCTTTGGACGGAGCACCTGGCCAAAGTCAACGACACTGACGTTGACGCAGACGACAACGCTAACGGAAACGACACGTTATCGTTTCGTTGTGCGCGCTGCAAGAAAACGTTCGACCGCCGCTCGAAGCTGAACCGCCACATCAACCATGACTGCGGCGAGTACGCGTGCACGCACTGCGGCAAAACGTACCGGCAGACGACGTCGCTCTACAAGCACATCAAGTACGAGTGTGGCAAGGACCCGCAGTTCCGCTGCGATCAGTGCAACTACGTCACCAAGTGGAAGGAGCGGCTCGGCGTACATAAGATCAGCAAACATGCTCAAAGATATGCTGTGTCAGAAATGTTTCCGCAGATACAAATCGAGAGGATCTCTGTTGCGACATCTGAAGATGGAGTGCGGGAAATTATTTCTCAAAACGTTGTTGGTTGTCTCTCCTCAATGCTGATACCCTCAACCTTCGTTATCATTAGATTGATAATGTTTATAATTGTTCGAGAAGATATGCTGTGTCAGAAATGTTTCCGCAGATACAAATCGAGAGGATCTCTGTTGCGACATCTGAAGATGGAGTGCGGGAAGTTACCCGGATTTCAGTGTCCCAAATGCCCCTACATGTCGAAACAAAAAGCACCCATGAAGAGGCACATTATTATTTCTCAAAACGTTGTTGGTTGTCTCTCCTCAATGCTGATACCCTCAACCTTCGTTATCATTAGATTGATAATGTTTATAATTGTTCGAGGCAAATTTGATAGCAGACATAAGCCGGCGACCCTTGAGCCAGAACAGCTTCACAGGTGCGATTTATGCTCCCGCACCTACAAGTACAGGGAGAACCTGAGAAGGCACAAACGCCAGGAGTGTGGAGTCGCGCCAAGATTTTCCTGCAACTTCTGTCCGTACAAAGCTAAACAAAAATCGTCGCTGCAATCTCATGTTATCAATATGCATTCGATGCTTCTGCACGACTCTGATTCCTCAGCTTTTCTCTTGCAGCAAGATCAAATCTGTTCTTTTTCAATTTGTGTTTCTATCTTTTTAGGCAAATATGTTTGTGACGCTTGTGGGAGGCGATACAGCTGGCCGAAATGCTTGAGGCGCCACCAGAAATTCGAATGTGGAAAAGAGCCTCGATTCAGTTGCAAGTTCTGTCCTCATAAGTCAAAGCATCACACGGATCTTAAGCTTCATATCCTAAGAATGCATTCGTCTTATTCATGTATTTGCGACGCTTGTGGGAAGCGATACAGTTGGATGAAAGACTTGAAACGTCACCAGCGATTCGAATGTGGAAAAGAACCTCGATTTAGTTGCCATCTCTGTTCTTATAGGTCAAAGCGTTACACGAGTCTCAAGGTTCATGTCATAAGGAAACATATGACAATTTCGTCGGATCTTGATAATATTTATTCTAAAAAAGCTCTAATTTTGTCTTTCCAATTTATAGGACGCCATGCTTGTAATGATTGTGGAAGGAGCTACAATTGGTCAAGAGACTTGAGACGCCATCAGAGACTGGAATGTGGAAAAGAACCACAGTTTCATTGTGATTCATGTCCTTATAAGGCAAAGCATAGCTCCAATCTCAGAATCCACGTAATGAGAAAACATACCTCGTTCTCGTCTCAGGTTGATAGGATGATTTTCCAGTAA
- Protein Sequence
- MNVEWSSILWTEHLAKVNDTDVDADDNANGNDTLSFRCARCKKTFDRRSKLNRHINHDCGEYACTHCGKTYRQTTSLYKHIKYECGKDPQFRCDQCNYVTKWKERLGVHKISKHAQRYAVSEMFPQIQIERISVATSEDGVREIISQNVVGCLSSMLIPSTFVIIRLIMFIIVREDMLCQKCFRRYKSRGSLLRHLKMECGKLPGFQCPKCPYMSKQKAPMKRHIIISQNVVGCLSSMLIPSTFVIIRLIMFIIVRGKFDSRHKPATLEPEQLHRCDLCSRTYKYRENLRRHKRQECGVAPRFSCNFCPYKAKQKSSLQSHVINMHSMLLHDSDSSAFLLQQDQICSFSICVSIFLGKYVCDACGRRYSWPKCLRRHQKFECGKEPRFSCKFCPHKSKHHTDLKLHILRMHSSYSCICDACGKRYSWMKDLKRHQRFECGKEPRFSCHLCSYRSKRYTSLKVHVIRKHMTISSDLDNIYSKKALILSFQFIGRHACNDCGRSYNWSRDLRRHQRLECGKEPQFHCDSCPYKAKHSSNLRIHVMRKHTSFSSQVDRMIFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -