Nlug021253.1
Basic Information
- Insect
- Nilaparvata lugens
- Gene Symbol
- -
- Assembly
- GCA_014356525.1
- Location
- chr13:7551775-7575111[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00068 0.11 13.5 1.2 2 23 431 452 430 452 0.95 2 19 0.38 58 4.9 0.8 1 11 457 467 457 480 0.78 3 19 1.7 2.7e+02 2.8 1.1 1 23 539 561 539 561 0.96 4 19 0.016 2.6 9.2 0.7 1 23 629 651 629 651 0.96 5 19 1.4 2.2e+02 3.0 0.5 3 23 740 761 738 761 0.94 6 19 2.6e-05 0.0041 18.0 0.6 1 23 773 795 773 795 0.97 7 19 1.2e-06 0.00018 22.2 0.6 1 23 803 825 803 825 0.98 8 19 0.00036 0.056 14.4 4.1 1 23 831 854 831 854 0.95 9 19 2.9e-07 4.5e-05 24.1 2.3 1 23 859 882 859 882 0.97 10 19 0.0024 0.37 11.8 3.5 2 23 1318 1339 1317 1339 0.95 11 19 3.5 5.5e+02 1.8 0.3 1 9 1344 1352 1344 1367 0.84 12 19 1.7 2.7e+02 2.8 1.1 1 23 1426 1448 1426 1448 0.96 13 19 0.016 2.6 9.2 0.7 1 23 1516 1538 1516 1538 0.96 14 19 5.9 9.2e+02 1.1 0.1 11 23 1605 1618 1602 1618 0.88 15 19 1.4 2.2e+02 3.0 0.5 3 23 1627 1648 1625 1648 0.94 16 19 4.7e-05 0.0073 17.2 0.5 1 23 1660 1682 1660 1682 0.96 17 19 4.9e-05 0.0077 17.1 0.7 1 23 1694 1716 1694 1716 0.97 18 19 0.00012 0.018 15.9 3.9 1 23 1722 1745 1722 1745 0.95 19 19 2.9e-07 4.5e-05 24.1 2.3 1 23 1750 1773 1750 1773 0.97
Sequence Information
- Coding Sequence
- ATGTCGGCCCAAGTTGAAATAATTTGTAGGTTATGTGGACTTTCTTGTGAACAAACTATCCACATTTTTGATAGGCTAGCTTCTGTTAATATGTTGCAGTATAAAATAATGCAATTGTTAGATATAGCTGTGGGTAAAAGTGACAAATTGCCTCATTCTGTGTGCTTATCCTGCGTGACCAAACTGGATAGTTTGTGGTGTTTCAAAAATACATGTCATCAAGTGCAAATTAAACTCAGGAAAATGATAGTTGTTGGTCAATCAAACCTTCCTGAATACGATAGATTGCAATCTGAACTTGACAGGGAGCTTTTGAATTTAGTGAATTTGAATCATAAAACACTCATCTCATCTAAAAACACTAGTGCTTCAGATTCATCTATCTTTCCTAGACTGTCAATGGAGGGAGGAAATGTTGTTTACCAACATCAAACAGTATCTAAAATTATAGAAAGTGCTTCTGTATCTGTCAATGTAGAGGAAGATGTTCAAATTGGCTACAAAACTGTATCACAAAGTAACCCAAATTCGGATGATGATAGTGAGGGAAATATTGAGGACAACTTAATGTCATTAGTTAGTGAAGAAAGTGCTAATGAAGAATGCAGTGTTAATGATGTTTCTAAAAATAGTGAACAGATTCTGTGTGATGATTCAAGTAGTGTTTTAGAACAAAGTGATGACACAAACGCTGGGAATAGAATGCCTATAGTTAGTGAAGAAGATGCAAATGCACAATGCAGTGTTAATCTGGATGTTGATGATATTAACGTTTCTGGAGATACTAGAGATTGTGATTCAAGTAGTGTTCTAAAACAAAATGACACAAACTCTAGAAATGCAATTGAGAGTTCTTCTTTGGATGCTACATCTAACGTAGAAATAGTGCAGTTGTTCAAAGACCATTATTACAGGATGGAGACTAACAGCAACTCAGACCTATTGTCCAATAGAATTCCCTATCTAACTGTTGAATCTCAAATGGGTACCAAACACATGATATACACTGTTTCTCCTGATATATCAAAATTCGATAGTGAACATGATTACCTGGTTGATAAATTGTATCTTGAAATGAAGATGTTTGATTTGGAGAATCCTAATGTTGGTCGAATACTGACTGAATGGCTGAATAATCTTTTGAATGGCGAAATATCATTAATGCCCTACTATTTCGGCTGGCTAGATAAAAGTAAACTCAATGTTAGCTTCAGATGCATTATATGCAAGAAAGTAATTCCTAGAAACAAGAGATTTGTAATGAACCATCTAGCAGATCATCTACTCTGGATTTGTCCAGTTTGTGGTAAATTTTGTAGAAATATTACCAAATTGAGGAATCATTTACTTCAACATTTGTCGCCTACTTTTGAATGTTCAACATGCGGTAAAAATTTTGGGAGTGATATTGAGAAATACAAAGTGCACAAGCGTGGTCATTATAAGTTCAGATGTCCGCCTTGTCAGTTTGAGTGTTGTGATGAAGAAAAGTGGTTGAAGCACTTGGAAAAGGATAGGAAAAATAATGAACTATGCTCTCCAGATTGCAGTTTGTTTTATGAGAGCATTGACAAATTTCGAGATCACGTCCTGGCGCTTGCAACTCTGGGAGGTTATGTTTGTGGCGCATGTGGAATGGCCTATCATTGCGAGGAATATTTGAAATTGCATTTGAAAGTGCATGGTTTGGAGCATGGCAGTAAGACTACTTGTGAAGAAAGTTTAGAAAACAATGACACTAGCTTCAGAATGAAACTTGATAGTTTTGCAAACTCTAGCAATGAGAAACGTTTTGATACAATGCAGAAAATACTTGCCAATGAAATCGATGTGAAGGAATTTCAAAATTCTCGTATAATGACAGGTGGCAAAGTTACTACTGCATTTATCTGCTTCAAATGTGGTCAAGGCGTGAAGACTGAAAAGAAATTTAGAATACATATTGAAAACCACATATCGATGACTTGCTATCAGTGTAAGCGGGATATGAGGGAATTAATTCATTTTAAAACTCATCTAAAGCGGTGCTCTTTCAAGAAAAGAAAGTGTGTCAGTTGTAAAAATGAAATCTGGCTGAACACCAGTAAAGAATACATTGAGCATGTAACTCTGCATCAGAAAAGGAAGATTTGCATCTATTGTCAGGTGATAAAAGATCCGGAACCGTTAAGTCGACATATTGAATCTGTACATGTTTCTGAACCAAAATCTTGGTTCTGTGACATTTGCAATGAAACACTGGTTGTATCCTACAAACAACTCAACCATTTTCGATCTAGGCATATGGCAGATAAACATCCCGAAAAATTGGATACATACATATGTGAAGTTTGTGGCAAGACTTTTAAAATGAAAGGTGTATTAAACAAGCATAAATTGTCGCATAAGTCTGTTGATAAGCCCAATTTTATCTGTGCCTATTGCAATAAAAGTTTTGGCAGAAAAGATCTCCTCATTAGTCACATTCGTAGACATATGAATGAGAAAAGCTTTGAATGTGCGATTTGTAAAAAATGTTTCAACCGGTTTTCCTCTTTGGATAAGCATCGAAAGGACATGCATTCCGTGAAAAAACATGTGTGTCATGTGTGTGACAAACGGTTCACATATCCTTCAGCTTTGAATGATCACATGAGAAGAGCTCACGAGAAATGCAGCCGGGGATTTCAGCAGACTGCTAACATGGGGCGTTTGGAGCTTGGATCCCAGTCTGGAATATTTCTCCTGCTAGCTTCTGTTAATATGTTGCAGTATAAAATAATGCAGTTATTAGATATAGCTGTGGGTAAAAGTGACAAATTGCCTCATTCTGTGTGCTTATCCTGCGTGACCAAACTGGATAGTTTGTGGTGTTTCAAAAATACATGTCATCAAGTGCAAATTAAACTCAGGAAAATGATAGTTGTTGATCAATCAAACCTTCCTGAATACGATAGATTGCAATCTGAACTTGACAGGGAGCTTTTGAATTTAGTGAATTTGAATCATAAAACACTCATCTCATCTAAAAACACTAGTGCTTCAGATACATCTATCTTTCCTAGACTGTCAATGGAGGGAGGAAATGTTGTTTACCAACATCAAACAGTATCTAAAATTATTGAAAGTGCTTCTGTATCTGTCAATGTAGAGGAAGATGTTCAAATTGGCTACAAAACTGTATCACAAAGTAACCCAAATTCGGATGATGATAGTGAGGGAAATATTGAGGACAACTCAATGTCGTTAGTTAGTGAAGAAGGTGCTAATGAAGAATGCAGTGTTAATATAGATGTTGATAATGTTTCTAAAAATAGTGAACAGATTATGTGTGATGATTCAAGTAGTGTTTTAGACCATGACGACCTAAACGCTAGGAATACAATGCCTATAGTTAGTGAAGAAGATGCAAATGTACAATGCAGTGTTAATATGGATGTTGATGATATTAACGTTTCTGGAGATACTAAAGATTGTGATTCAAGTAGTGTTCTAGAACAAAATGACACGAACTCTAGAAATGCAATTGAGAGTTCTTCTTTGGATGCTACATCTAACGTAGAAATAGTGCAGTTGTTCAAAGACCATTATTACAGGATGGAGACTAACAGCAACTCAGACCTATTGTCCAATAGAATTCCCTATCTAACTGTTGAATCTCAAATGGGTACCAAACACATGATATACACTATTTCTCCTGATATATCAAAATTCGATAGTGAACATGATTACCTGATTGATAAATTGTATCTTGAATTGGATATGTTTGATTTGGAGAATCCTAATGTTGGTCGAATACTGACTGAATGGCTGAATAATCTTTTGAATGGCGAAATATCATTAATGCCCTACTATTTCGGCTGGCTAGATAAAAGTAAACTCAATGTTAGCTTCAGATGCATTATATGCAAGCATGTAATTCCTAGAAACAAGAGATTTGTAATGAACCATCTAGCGGATCATCTGCTCTGGATTTGTCCAGTTTGTGGTAAATTTTGTAGAACTATTACCAACTTTAGGAATCATTTGCATCAACATTCGTCGCCCACTTTTGAATGTTCAACATGCGGTAAGAATCTTGGGAGTGATATTGAGAAATACAAAGTGCACAAGCGTGGTCATTATAAGTTCAGATGTCCGCCTTGTCAGTTTGAGTGTTGTGATGAAGAAAAGTGGTTGAAGCACTTGGAAAAGGATAGGAAAAATAATGAACTATGCTCTCCAGATTGCAGTTTGTTTTATGAGAGCATTGACAAATTTCGAGATCACGTCCTGGCGCTTGCAACTCTGGGAGGTTATGTTTGTGGCGCATGTGGAATGGCCTATCATTGCGAGGAATATTTGAAATTGCATTTGAAAGTGCATGGTTTGGAGCATGGCAGTAAGACTACTTGTGAAGAAAGTTTAGAAAACAATGACACTAGCTTCAGAATGAAACTTGATAGTTTTGCAAACTCTAGCAATGAGAAACGTTTTGATACAATGCAGAAAATACTTGCCAATGAAATCGATGTGAAGGAATTTCAAAACTCTCGTATAATGACAGGTGGCAAAGTTACTACTGCATTTATCTGCTTCAAATGTGGTCAAGGCGTGAAGACTGAAAAGAAATTTAGAATACATATTGAAAACCACATATCGATGACTTGCTATCAGTGTAAGCGGGATATGTGGAAATTAGCTTGTTTTAAAACTCATCTAAAGCGGTGCCCTTTCAAGAAAAGAAAGTGTGTCAGTTGTAAAAATGAAATCTGGCTGAACACCAGTAAAGAATACATTGAGCATGTAACTCTGCATCAGAAAAGGAAGATTTGCATCTATTGTCAGGTGATAAAAAATCCAAAACAGTTGAGTCGACATATTGAATCTGTACATGTTTCTGAACCAAAATCTTGGTTCTGTGACATTTGCAATGAAACACTGGTTGTATCCTACAAACAACTCAACCATTTTCGATCTAGGCATATGGCCGATAAACATCCCGAAAAATTGGATACATACATATGTGAAGTTTGTGGCAAGACTTTCAAATTGAAAGGTGACTTATACCAGCATAAATTGTTGCATAAGGCGGTTGATAATCATGTTGATAAGCCCAATTTTATCTGTGCTTATTGCAATAAAAATTTTGGCAAAAAAGAGTCCCTCATTAGTCACATTCAAAGACATATGAATGAGAAAAGCTTTGAATGTGCGATTTGTAAAAAATGTTTCAACCGGTTTTCCTCTTTGGTTAAGCATCGAAAGGACATGCATTCCGTGAAAAAACATGTGTGTCATGTGTGTGACAAACGGTTCACATATCCTTCAGCTTTGAATGATCACATGAGAAGAGCTCACGAGAAATGCAGCCGGGGATTTCAGCAGACTGCTAACATGGGGCGTTTGGAGCTTGGATCCCAGTCTGGAATATTTCACCTCCGGGGATTTCAGCAGACTGCTAACATGGGGCGTTTGGAGCTTGGATCCCAGTCTGGAATATTTCACCTGAGAAAAAAGGGTGGAGTGGCCATTACAAACTGA
- Protein Sequence
- MSAQVEIICRLCGLSCEQTIHIFDRLASVNMLQYKIMQLLDIAVGKSDKLPHSVCLSCVTKLDSLWCFKNTCHQVQIKLRKMIVVGQSNLPEYDRLQSELDRELLNLVNLNHKTLISSKNTSASDSSIFPRLSMEGGNVVYQHQTVSKIIESASVSVNVEEDVQIGYKTVSQSNPNSDDDSEGNIEDNLMSLVSEESANEECSVNDVSKNSEQILCDDSSSVLEQSDDTNAGNRMPIVSEEDANAQCSVNLDVDDINVSGDTRDCDSSSVLKQNDTNSRNAIESSSLDATSNVEIVQLFKDHYYRMETNSNSDLLSNRIPYLTVESQMGTKHMIYTVSPDISKFDSEHDYLVDKLYLEMKMFDLENPNVGRILTEWLNNLLNGEISLMPYYFGWLDKSKLNVSFRCIICKKVIPRNKRFVMNHLADHLLWICPVCGKFCRNITKLRNHLLQHLSPTFECSTCGKNFGSDIEKYKVHKRGHYKFRCPPCQFECCDEEKWLKHLEKDRKNNELCSPDCSLFYESIDKFRDHVLALATLGGYVCGACGMAYHCEEYLKLHLKVHGLEHGSKTTCEESLENNDTSFRMKLDSFANSSNEKRFDTMQKILANEIDVKEFQNSRIMTGGKVTTAFICFKCGQGVKTEKKFRIHIENHISMTCYQCKRDMRELIHFKTHLKRCSFKKRKCVSCKNEIWLNTSKEYIEHVTLHQKRKICIYCQVIKDPEPLSRHIESVHVSEPKSWFCDICNETLVVSYKQLNHFRSRHMADKHPEKLDTYICEVCGKTFKMKGVLNKHKLSHKSVDKPNFICAYCNKSFGRKDLLISHIRRHMNEKSFECAICKKCFNRFSSLDKHRKDMHSVKKHVCHVCDKRFTYPSALNDHMRRAHEKCSRGFQQTANMGRLELGSQSGIFLLLASVNMLQYKIMQLLDIAVGKSDKLPHSVCLSCVTKLDSLWCFKNTCHQVQIKLRKMIVVDQSNLPEYDRLQSELDRELLNLVNLNHKTLISSKNTSASDTSIFPRLSMEGGNVVYQHQTVSKIIESASVSVNVEEDVQIGYKTVSQSNPNSDDDSEGNIEDNSMSLVSEEGANEECSVNIDVDNVSKNSEQIMCDDSSSVLDHDDLNARNTMPIVSEEDANVQCSVNMDVDDINVSGDTKDCDSSSVLEQNDTNSRNAIESSSLDATSNVEIVQLFKDHYYRMETNSNSDLLSNRIPYLTVESQMGTKHMIYTISPDISKFDSEHDYLIDKLYLELDMFDLENPNVGRILTEWLNNLLNGEISLMPYYFGWLDKSKLNVSFRCIICKHVIPRNKRFVMNHLADHLLWICPVCGKFCRTITNFRNHLHQHSSPTFECSTCGKNLGSDIEKYKVHKRGHYKFRCPPCQFECCDEEKWLKHLEKDRKNNELCSPDCSLFYESIDKFRDHVLALATLGGYVCGACGMAYHCEEYLKLHLKVHGLEHGSKTTCEESLENNDTSFRMKLDSFANSSNEKRFDTMQKILANEIDVKEFQNSRIMTGGKVTTAFICFKCGQGVKTEKKFRIHIENHISMTCYQCKRDMWKLACFKTHLKRCPFKKRKCVSCKNEIWLNTSKEYIEHVTLHQKRKICIYCQVIKNPKQLSRHIESVHVSEPKSWFCDICNETLVVSYKQLNHFRSRHMADKHPEKLDTYICEVCGKTFKLKGDLYQHKLLHKAVDNHVDKPNFICAYCNKNFGKKESLISHIQRHMNEKSFECAICKKCFNRFSSLVKHRKDMHSVKKHVCHVCDKRFTYPSALNDHMRRAHEKCSRGFQQTANMGRLELGSQSGIFHLRGFQQTANMGRLELGSQSGIFHLRKKGGVAITN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -