Basic Information

Insect: Nilaparvata lugens
Gene Symbol: -
Assembly: GCA_014356525.1
Location: chr4:66393012-66402540[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0002 0.031 15.2 2.4 2 23 344 365 343 365 0.97

2 16 0.00018 0.027 15.4 0.5 1 23 409 432 409 432 0.97

3 16 0.019 2.9 9.0 0.8 1 20 436 455 436 457 0.94

4 16 0.063 9.9 7.3 0.3 5 22 474 491 465 491 0.87

5 16 0.00057 0.088 13.8 0.7 3 23 500 521 499 521 0.97

6 16 0.89 1.4e+02 3.7 1.5 2 23 534 554 533 554 0.94

7 16 0.00082 0.13 13.3 1.8 1 23 561 583 561 583 0.98

8 16 2.8e-06 0.00044 21.0 2.8 1 23 589 612 589 612 0.96

9 16 1.2e-05 0.0019 19.0 2.5 1 23 622 644 622 644 0.98

10 16 0.016 2.4 9.2 2.2 1 22 650 671 650 674 0.91

11 16 0.042 6.5 7.9 1.2 1 21 696 716 696 717 0.94

12 16 1.3 2e+02 3.2 0.6 1 19 751 769 751 775 0.76

13 16 0.027 4.2 8.5 0.7 1 22 798 819 798 822 0.90

14 16 9.7e-05 0.015 16.2 1.0 2 23 825 847 824 847 0.94

15 16 0.00023 0.035 15.0 0.7 1 23 868 891 868 891 0.97

16 16 0.011 1.7 9.7 0.9 1 20 929 948 929 950 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0002	0.031	15.2	2.4	2	23	344	365	343	365	0.97
2	16	0.00018	0.027	15.4	0.5	1	23	409	432	409	432	0.97
3	16	0.019	2.9	9.0	0.8	1	20	436	455	436	457	0.94
4	16	0.063	9.9	7.3	0.3	5	22	474	491	465	491	0.87
5	16	0.00057	0.088	13.8	0.7	3	23	500	521	499	521	0.97
6	16	0.89	1.4e+02	3.7	1.5	2	23	534	554	533	554	0.94
7	16	0.00082	0.13	13.3	1.8	1	23	561	583	561	583	0.98
8	16	2.8e-06	0.00044	21.0	2.8	1	23	589	612	589	612	0.96
9	16	1.2e-05	0.0019	19.0	2.5	1	23	622	644	622	644	0.98
10	16	0.016	2.4	9.2	2.2	1	22	650	671	650	674	0.91
11	16	0.042	6.5	7.9	1.2	1	21	696	716	696	717	0.94
12	16	1.3	2e+02	3.2	0.6	1	19	751	769	751	775	0.76
13	16	0.027	4.2	8.5	0.7	1	22	798	819	798	822	0.90
14	16	9.7e-05	0.015	16.2	1.0	2	23	825	847	824	847	0.94
15	16	0.00023	0.035	15.0	0.7	1	23	868	891	868	891	0.97
16	16	0.011	1.7	9.7	0.9	1	20	929	948	929	950	0.95

Sequence Information

Coding Sequence: ATGAGTTTGAACTGCTGTGTACCGGGGTGTGATAACGCTTTTGATTCTAGTGGAGCTGAGAAAAGCTCAGTAACTTTTCACAGCTTTCCAAAGAATGAATTGCCGCGAATTGCGTGGCTCAAGGCAACCGGCAGACGTTACAACAAACGCGTTTCGGCAGTTGTTTGCTCCGACCATTTCAACGAAGATGACTTTGTCATTGGCACTCATAAACTTATGCTGAAGAGAACTGCAGTGCCCTGCATATTCACTCCTGACCAGATACAGCTCTTGGAACAGCTGAAAACATGTCCAGCCTCTAATGAAGATAATGTAAAGAACCGTCCTAGTGTGAGTGTCAATCCTCCGCCGGTTATTTCAATGACCAAAATATGCGACCGCAAGCTTGGAGACATGTCTCTACTTTGTAGAATTTGTGCAAGGAGAAGTGACAGGTTGATATCGCTATTCGAAGGTGAAGGGCTTGATGCTGAATTAGCCCTTAAAATGCACCAATATTTATCTTTGAATGTTACCGAAGACGATGATCTACCCAAAAAAATCTGTCTACCATGTGCTACAGCGTTGGTGTCCTGGCATGACATTGTGCTCATGTCTATTGATGCAATCGGTACACTCAACGCCCTACTAGAATCTGACAATGACAACAAACTGAGAAGCATTTCAGAACAGGAAGCCAAGCGACAGAGAGAGAATGAGCTATCGGCATCCAATAATGGAATTCTACAAAACCAGCAACTAGATTCTATGAATACGCCAGCTTCGATGGACATTTCTGGAGAACTGGATCCGGTGTCTGCTGATAAAACGCCAGCCAAGAACAAGATAAAAGATTTACAAGAATACAAATTGCATTACCCTTGGAAGTACCACGAGATAGATGGTACCTTTTTCCTTAGAACAAAGGTGTTGGGTTTTGAGCCGGCAGCTGAAGCGTACACCTATATATGTTGTTTGTGCTGTGAAGAGTTCAACGACAGAGACGTGATTGGTCATTCCAAATCGCACTATCCTTTGCAAGAAACCGACTCGTGTCAACTGTGCCATTTCAGTTTCTCAACAATAGAACTGCTGAGAAATCACATCAAACGACATATGATTATAATTGATGATCAATACTTGAGTAAGTCCGCTCGTAATAAACCTAAAAGTAAGCAGCCATATCGTCCGCCAAAAGTAGCGGCCACGCCCAAGCCACCGCCACAACCCAAAAAGAAACCTCCATATGTATGCGAATATTGTGGAATAGAGTACATGCGTAAATCGCTCTACGATAGGCATGTTCGGAACCAACATCTCGCGCCTTTCAAGTGCCGAAATTGCCCTGAGAGATTCGATAGCCATACAGCACTTGATAGCCATAGACTCAATTGCCAACGTGTCAAAGTTGAGCCTTGTGAGAGCGATGATTTAATATGCAAATGTAACAAGTCTTTCAATACCTTTGAAGAATACAATGATCACACTCTGACTTGCGATGAAGATACAGACCTACTGTGTGAAGAATGTGGTCTAGTATTTCAAACAAACAAAGAATACAAGAAACATAATATGACGACTCATTCGAAGATACCCGTAAGGAAAGAAGGTGCCACTTGGATGTGTGAGATTTGTGGCTGCAAACTGGGTAAGTACAGTGCTAGGAAGCATTACATGACACATTCCTTCAAAGAGAAGAAGTTCACTTGTAAAGTTTGCGACATGAATTTCCTGCATAGATGGTCACTCGCTAATCACATGCAATCACACAGCAACATACGACCTTTTGTCTGTGAGATCTGTTCAAGAACATTCAAAAGATCTGATCATTTGAGGGAACATCAGCTCAATAAGCATCAAATTGGAAAATCAAAGCATAGTGATTTCAAGTGTGATATATGCAATAGATACTTTACTACTGAGACTTACCTTATTCGTCACAAGCGTCTGCATTCGACTGGCATGAGTTACGAGTGCCGGGTGTGCAAAGGCCGGTTCCCCACCGAACACAGCCTGAAGATGCATCAGACGCGGATGAAGCACGACAACGGAAGTGCAGCATCGGTCAATATTGTATCCACGTCATCTTCCGACCGCATCAATAAGTTCAGGTGTAAAGCTTGCTTCAAGCGCTATGGCTCTATGGCCAGTCTGAAGAAGCACAGGCTTAAAAACTGTCCAAAACTAAATAATATAAAAGATGAAGTTAAAGAAGAAGATGAAGATGAGCCTGAAAGTAAAAATGAGGAGAATGAAGATTTAGAAAAAACTTACGAATGTCCAAAATGTAATTTGAGATACTTGACAGACTTTGGGTTGAAACTTCATTTTGCTCGCTCAAAACACTCGGATGTCTTGTCAAAGTATAAAAAACGTCCGAAAAAGGATCCCAATGAAAAGAAGAATCCGCGTTTCAAGTGCGTGCAGTGTGGCGATATATTCAGTTCGTTGGTGAGCTTGAGAATGCACAAGATTAAAAGGAAGCACTTTTCACAATGCCCCCACTGCGGGAAGCGATTCGCGATGGAATTCAAGTTGAAAGTCCACCTGGTGAAGGTGCATCAGCAGAAGGATGTGATTGTGGAGGAGAGCGACCTGCTGACTCAGGAGGAGAAGCTGCCTTACCAGTGTGACGTGTGCTCGCAGCTGTTCGCCATGAAGCACAACTTGGAGGCGCACATCGCCAAGAAGCACTCAGTCAACGCGAACGACGAGCCACTTGAAACTGCCTGCAAACGCAAGCCCAAGGTCGAGCCTGTCGACGAAGACGTTTACGAGGAGTTCACTCAGGAAATCTCAGTTATCTACCACTGCACCGAGTGCTGGGAGAATTTCGCTTCCGAGGAAGACTTCAACAATCATACACATGAAGCTAGTATTATATTAACCGAAGAACTCACTGATAATGCTATCATTTCCGAAGTTATTGAGACTGAGTCATAA
Protein Sequence: MSLNCCVPGCDNAFDSSGAEKSSVTFHSFPKNELPRIAWLKATGRRYNKRVSAVVCSDHFNEDDFVIGTHKLMLKRTAVPCIFTPDQIQLLEQLKTCPASNEDNVKNRPSVSVNPPPVISMTKICDRKLGDMSLLCRICARRSDRLISLFEGEGLDAELALKMHQYLSLNVTEDDDLPKKICLPCATALVSWHDIVLMSIDAIGTLNALLESDNDNKLRSISEQEAKRQRENELSASNNGILQNQQLDSMNTPASMDISGELDPVSADKTPAKNKIKDLQEYKLHYPWKYHEIDGTFFLRTKVLGFEPAAEAYTYICCLCCEEFNDRDVIGHSKSHYPLQETDSCQLCHFSFSTIELLRNHIKRHMIIIDDQYLSKSARNKPKSKQPYRPPKVAATPKPPPQPKKKPPYVCEYCGIEYMRKSLYDRHVRNQHLAPFKCRNCPERFDSHTALDSHRLNCQRVKVEPCESDDLICKCNKSFNTFEEYNDHTLTCDEDTDLLCEECGLVFQTNKEYKKHNMTTHSKIPVRKEGATWMCEICGCKLGKYSARKHYMTHSFKEKKFTCKVCDMNFLHRWSLANHMQSHSNIRPFVCEICSRTFKRSDHLREHQLNKHQIGKSKHSDFKCDICNRYFTTETYLIRHKRLHSTGMSYECRVCKGRFPTEHSLKMHQTRMKHDNGSAASVNIVSTSSSDRINKFRCKACFKRYGSMASLKKHRLKNCPKLNNIKDEVKEEDEDEPESKNEENEDLEKTYECPKCNLRYLTDFGLKLHFARSKHSDVLSKYKKRPKKDPNEKKNPRFKCVQCGDIFSSLVSLRMHKIKRKHFSQCPHCGKRFAMEFKLKVHLVKVHQQKDVIVEESDLLTQEEKLPYQCDVCSQLFAMKHNLEAHIAKKHSVNANDEPLETACKRKPKVEPVDEDVYEEFTQEISVIYHCTECWENFASEEDFNNHTHEASIILTEELTDNAIISEVIETES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01059937;
90% Identity: iTF_01059937;
80% Identity: iTF_01059937;