Nlug001983.1
Basic Information
- Insect
- Nilaparvata lugens
- Gene Symbol
- -
- Assembly
- GCA_014356525.1
- Location
- chr4:66183201-66189236[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0086 1.3 10.0 0.2 3 23 122 142 120 142 0.95 2 15 0.22 34 5.6 0.2 1 21 179 199 179 200 0.94 3 15 1.3 2e+02 3.2 0.8 2 23 272 293 271 293 0.95 4 15 0.027 4.2 8.5 0.6 2 21 337 356 336 357 0.94 5 15 1.7e-06 0.00026 21.7 1.0 1 23 366 388 366 388 0.97 6 15 1.7 2.6e+02 2.8 1.0 3 23 395 415 394 415 0.87 7 15 0.25 39 5.4 0.2 2 23 431 451 430 451 0.95 8 15 1.8e-06 0.00028 21.6 3.6 1 23 457 479 457 479 0.99 9 15 0.002 0.31 12.0 0.8 1 23 486 509 486 509 0.95 10 15 2.1e-06 0.00033 21.4 4.4 1 23 517 539 517 539 0.99 11 15 0.014 2.2 9.4 0.5 1 21 545 565 545 569 0.91 12 15 0.00047 0.074 14.0 0.1 1 23 588 610 588 610 0.97 13 15 2.2e-05 0.0034 18.2 0.7 1 22 623 644 623 647 0.91 14 15 0.0092 1.4 9.9 3.6 1 22 674 695 674 698 0.90 15 15 0.00022 0.034 15.1 1.5 1 23 730 753 730 753 0.95
Sequence Information
- Coding Sequence
- ATGAATCAGATTACTATTCTTGCTCAACCACAGGATGATTATTGTCCTAAGTTATTGCTTGATCATGAAGACCTAGAGAGCCACAAAAAGGTACATGATACCAACGAAATGCTCTCTGAAGAGTTGATACCTTCAAACTGTAAACCTGCCTATGAGATACTGCAAGAGATAGATGGCATTGATGTGACTGTTGTAGTCAGTGGTTTTATTATGGGAAGTGAAAGAAATGATACTATTCAATCGTCTCTTGGTAATAACAAGGAAACAGCGAAGCACACATGTTGTATTTGCTTGCAAGCAGTGAACACAATCAATATAGCTTCTCATTGCGACTCTCACTACCCATTAAAGGCCACTGATAACTGTCAGGTTTGCTCATTACATTTTGAGGACACTTCAGCTTTAGAAGAACATTTGATTGAACATAAAATTGCTTTAGAGGTTTTGATATGCATGAATTTGGAGGAATTTAATAGAAAAGTAGCTGAATTGTGTGAGAATGATATGGGAGAGAACAACAATTTAATTCCTGGTTTCCAGTGCAATTTGTGTCGCATGATTTTTCTAGATGAAAGAAAATTGAGCAGTCATATGGAATCAGTCACTTGTGTAAGTTATGTACAACCCATAGAATTTCTGAAGGAATCAGAAACTGGTATGGATTTGGCAATTTATGGATATTCTTCACATTCCCGATCTGAAGGAGAAGGTGAACCAAGCTCTTACATATGTTGTATATGCTTGGAAGAACTGGAGAGTAAAGATTTTATTTTATTGCATTACAAACTGCACTATCCTTTGAAAGCTACAGATACATGTAAGCTGTGCAACCTCAGCCACGATTCAGTTGATTTGCTGGAACTGCATCTGAGTAAGCACAGAGTTCTGCTGAATGTGATGGATCTGGCTGTCTCAACCGGATCGCACTCTGCTTGTCAGCAAATACAAGAAACTTCCAACTTCCTAGATGCATGCAATTTACAAATCGCCATCACTGAGGATATAGTAAAATGTCTTGTTTGTGAGACTCCATTTGCTGATGAATGTACTTTCAAGAAGCATTTACAGAGTGGGAAATGCATTAAATTCAAGACATTTGCTTGTCGTGAGTGTGGAAGGAATTACAGTACACAAAGACTGCTCAATGAACATATGAAAACGCACTCTGGTACTTATTCGCTGTGCCACATTTGTGGTGCGAATATCAAGACTCGTGGAATGCGCAGGCATGTGAGGACAGTGCATGAACGATGGGAGGCCACTCAACTCCAGAATAGTGCCAACAAAAAAGTTTGTCAAGTTTGTGGAGTCACTGTAAGCAAGTACGTTTTCAATCAACACCTTGCTACACATTTTTTCAATAGAAACTACAAATGCGGTTCGTGCGATAAGACGTTCTCCCATAAAATTTCCTTGAAGATACACTTGAAAACTCATGAGTCGGCGCAAAAGACGTACACATGTGAAATTTGTTCAGACACCTTTCGACGGCGTGACCATGTGGTCGCTCACAAGGCTAGGATACACAACATAATTAGGGTGAAGAACTATAAGTGTGATGTGTGTCAAAAGAGTTTCAGCACATCCAACACTTTACATGTGCATAAAAGGACGCATCTGGAGTCGCAAAACTATCAGTGTTTGGAATGCAAAGTGATATTCTCTTCAGGAATGGGGTTGAAGAATCATCAGAGTCAAACTAGACACGAAGGTGTGAAAATAATTTCTTCGGCTTTAGACGAGCACGTGAAGGTAAATCGGTTCGTTTGTAAAATCTGTGGCCAACGATATGGATCATTGGCAAGTTTGAGAGGCCATGAAAACATACACAAAGACAGCAACACAACTGACCAATCACCGTCGACCTATGAGTGTCCAGAATGCCACAGGAACTACTCGTCTCAGCGAAGCTTAGAGCTGCACATCATCATGACAAACCATGCTGTCGATCGCAAACAATGGAAACGGAGAGCGCAAGCGCAACAGCCGCAAGCTGAGAAAAAGCCAACCGAGAGAAAGTTCGCATGCAATATGTGTGATTCGAAATTCATAAAATTGTTCCACTTGAAAAAACACCGACTGAGGTTGAAACATTTCCTGGTCTGTTCGCTTTGCAACGATGCAACAGTGACTGATTTAGATAGGCACAACAAAGAGAAGCATCCACCCAGTGAGAGCAATATTACATACAACTGCACTGAGTGTCCAAAGAAATTTAAAAAATTGAAAATGTTAGATAACCATATATCTCTGAAACATACTAATCAAACAGACGTCCCTGCTGCTACCGAAACATCTTCACAATCTTCTCCTTTTTCTAGTATAATTGTTGTTGAAGGGAGTAGTTTACAATCCTACAAGGAGTTTTTTAGCTGA
- Protein Sequence
- MNQITILAQPQDDYCPKLLLDHEDLESHKKVHDTNEMLSEELIPSNCKPAYEILQEIDGIDVTVVVSGFIMGSERNDTIQSSLGNNKETAKHTCCICLQAVNTINIASHCDSHYPLKATDNCQVCSLHFEDTSALEEHLIEHKIALEVLICMNLEEFNRKVAELCENDMGENNNLIPGFQCNLCRMIFLDERKLSSHMESVTCVSYVQPIEFLKESETGMDLAIYGYSSHSRSEGEGEPSSYICCICLEELESKDFILLHYKLHYPLKATDTCKLCNLSHDSVDLLELHLSKHRVLLNVMDLAVSTGSHSACQQIQETSNFLDACNLQIAITEDIVKCLVCETPFADECTFKKHLQSGKCIKFKTFACRECGRNYSTQRLLNEHMKTHSGTYSLCHICGANIKTRGMRRHVRTVHERWEATQLQNSANKKVCQVCGVTVSKYVFNQHLATHFFNRNYKCGSCDKTFSHKISLKIHLKTHESAQKTYTCEICSDTFRRRDHVVAHKARIHNIIRVKNYKCDVCQKSFSTSNTLHVHKRTHLESQNYQCLECKVIFSSGMGLKNHQSQTRHEGVKIISSALDEHVKVNRFVCKICGQRYGSLASLRGHENIHKDSNTTDQSPSTYECPECHRNYSSQRSLELHIIMTNHAVDRKQWKRRAQAQQPQAEKKPTERKFACNMCDSKFIKLFHLKKHRLRLKHFLVCSLCNDATVTDLDRHNKEKHPPSESNITYNCTECPKKFKKLKMLDNHISLKHTNQTDVPAATETSSQSSPFSSIIVVEGSSLQSYKEFFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -