Nlug004559.1
Basic Information
- Insect
- Nilaparvata lugens
- Gene Symbol
- prdm10
- Assembly
- GCA_014356525.1
- Location
- chr5:48939974-48985222[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.5e-05 0.0038 18.0 1.2 2 23 658 679 657 679 0.96 2 14 0.00014 0.021 15.7 0.9 1 23 735 757 735 757 0.97 3 14 0.0012 0.18 12.8 4.1 1 23 762 785 762 785 0.98 4 14 0.012 1.9 9.5 0.8 3 23 812 832 811 832 0.96 5 14 0.001 0.16 13.0 0.4 2 23 872 893 871 893 0.97 6 14 0.0029 0.46 11.5 2.4 3 23 920 940 918 940 0.97 7 14 0.0021 0.32 12.0 0.7 2 23 946 967 945 967 0.97 8 14 0.0003 0.046 14.6 0.4 1 23 973 995 973 995 0.97 9 14 7.4e-05 0.012 16.5 3.5 1 23 1001 1024 1001 1024 0.98 10 14 0.0012 0.18 12.8 4.8 1 23 1029 1051 1029 1051 0.97 11 14 4e-06 0.00062 20.5 1.8 1 23 1057 1080 1057 1080 0.94 12 14 0.0029 0.44 11.5 1.3 1 23 1117 1140 1117 1140 0.95 13 14 0.00015 0.024 15.5 2.3 1 23 1162 1185 1162 1185 0.97 14 14 0.002 0.31 12.0 2.6 3 23 1225 1246 1224 1246 0.98
Sequence Information
- Coding Sequence
- ATGAATGAATCACAACCCCCATTCACGCGGATGGCTTCCAAGAAGCCGTTCCATCGCATGACTCACCTTCCTCCCGCCCCCTCCCTCTGCCCTTTCTGGTGTCGGGAAAACTTTTTCGCTGGCCTTGAACTCAGTGGTTGGGCCGACAATCGATATGATAGCGTCGCCGGTCGGTGTGATGTTGTGGCGCGGAATGTGGACCGGCTTATTTGTTGGGCTGGTGCTCAGTTGGTTCTCTGTTCAGTCGGTCTCTGGAGAAACGAGTCGAAGGTGGTGATAGACGAACGAACATGTCTGACACCTTGCTACCCGACTACAACGGCAACTTTGCCTACTCCAATTACTGGCCTTTCTGTGTACTGTGTCGCCCGCCACCTTCAATTATTTAGCACGCTCGCACTGTGCCCGAGTGAGGGTGGTGTAATGGAGGATGGCACAAAGGAGGACGAAGATATGGGTCCACACGAGTGGCCTCCAGATTCTTCGGCTGGCAAACACCCTGATCCCAAGCTGCTATTTCTCACGGTGGAATACGTGGGAGAAGAAGCAGGGGGGTTTGGGGGCGGTGAGGAAGCAGGGTTGATGTGTGACTTGGAGCAGCGCTGTGTGAGTCAGTCGCTGGCCCTGGAGGGAGCGTGCTATTCGCCCGCTGCTGCCGCCTTCGCGTCGCTCGCTCAGACCCAGCCGCCTTCGCCGCCTCCACCCCCGCCCCCACAACATCAGGACGATGCAGTGTTCCTGTCCGACGACATGGTAGACCAGCAGCCATCGCAGTCACTGATCACCAACTCCTCCCCCCACCACCACCATCACCACTCGTCACCCTCCTCCTCACCCCTGCTGGTGGCCCCCTGCAGTCCCTTCCCCCCTCCGCCACAAGCCACCTCGGTGGTGACGTCATCGCCAGCCAGCTATGTGACGTCACAGGCGGCCAACTACTATCGGCAGTCGCCTCGTGGTGCCTCTGGGGCCGAGTACGTTCTGCCTGGAGACGGCCAGGGTGATGGGTCGTTGCCTAGCGACCAGCAGATGAGAGGTCTGCGGGGTGATATGAAAGTTGGAGATGGAGTTGGTCAAATCGAGCTACTTCTGGATGATGATGGGGTGGCTCTCACGGTCATTGATCCTCAGGATTCTGATGTCATTCAGATTCCTGGAGATTGTCTGATGCCATCAAATCAAAAACCTTCTGACATCGGGGTATCTGGAGACGAAACAAACTTCTATGACTCCATTAAACCACAAGGTTTAGTGGTAGAAACGAGCGAAAACGGCGAACTTCGATTTGTGAGTTTTCTGGATACAGTTGAAACAGAAAACCAGCTGGAAGCAATCGAAGAGCAGGCTCAATCACCAATGACACTCATCATCGACGAAACCATTTCCAATGTCTCCTCGCCGGCGCAGGGCGAGTCCATTGCTGCCAATAATGGCCCATTCTGGTGTGAGGATTGCCAGATGTCGGTTGAGGCGGAGTGCAGCCTGCACCGAGTGAACAGCATCATCTGCGACAAGCCGGTGCCTTCGCGGGCCAGGGCCACACTCCCCGCCTCCTATTTGGCCATCAATCTCGTCAAACCAAATGTTTACGGTATATTCGCAAGGAAAACGATTCCGAACAGAACGCAGTTCGGGCCGATCGAAGGCATTCTGTTGAAGTGCGAGGACGTGTGGACTGACTCTCCGCTCGAGCTGCTTGTTGAAACTGAAACTGGTGAAATGCATCGTCTTGACGTGTCTAATGAAGATACGTCAAACTGGATGCGTTTCGTGCAGCCAGCGTCATCGGCCAAGGAACAGAACCTGGTGCTGAGTCAGCAAGGCCACTCGCTCTACTTCACGAGCACCCGACCCATTCACCCGCGCCAGCAGCTGCTGGTCTGGTACAGCGCCGCCTACGCAGCCAAGCGCCACCTGCCGCAGCTGCTTGAGCCGCCTCAGCCGCCACCTGTTCCAGAAAAAACCTACTGGACCTGCTTTGAATGCAATCAGAAGTTTAAATCGTCTGAAGAGTTGCAGAAACATCTCAACCTACATGAAAACGAGAGGGTGTTGCAGGAGGTGAGAAACTATGAGCTGATGAAGACCAGGTCATCTTCAAAGCGTAATGGCCTTCAGCTGGCACTGCGCGAAAAGTCACAAAATATCGATGATCCCCCTCCCCCAAAGAAACAGGTGAAGTCGTCATCGCAGCAGACGTCGTTCGAATGCACCGCCTGCAGTCGCAGCTTCCCGAGAATGTACAGCTTGAAACGTCATCTGCTGCTGCACTACGATAAGAAGTTCAAATGTCCGCACTGCAGTCTCGAGTTCAGTCACGCAGATAATCGCGACAAACATGTGAGGAAGCAGCACAGTGACAAGTGCGTTGATTTGAGAAATATTTTCAACAGTTCAGTGAACACCGACAAGAAAATTGATCAACAATGGTTGTGCAAACACTGCAACCTGACATTCGGCAGTGCGTCAGTGCTGAACCTGCACACGCTTGCCCACGCGGCCGACAACCTGGAGGGAGGGGATAGTGCAGGAGAAGTGGTGGGGGGTGGACTGCCCTCAGACTTCGCCCACATCTACCACAACGGCGAGTTCATGGTCGAGAATGGCTCCATCCAGTGTCCGCAGTGCACCAAGTTGTTTCAAACAAAGCGAGAATTGGTCGATCACGTGTCGACTCACGGTCGACCCAAGCAGGAGGAGGAGGAAGAGGAAGAGGAAAATGGTTTGGAAAACTTTCCCGACGAAAATAAGTTTGGCTGCCTGTACTGCACTCGAAGCTTCGACACTGCTGACTGTCTCAAGCAACACAGTCTCACCCATGTCAGCACCGCAGTGCAGTGCAATGTCTGCTTTAAACGATTTCTGAACAATTCGGCTCTGACAGGACATCTGAAATCTCATGCCATACTGAAATCATTTGAATGTCCAATTTGCAAGGAAACATTCGACCACATGCTGTCTCTGAAAGCGCATGTTCAAGGTCATGCCAATAATGGTATCTTCACTTGCCCTCATTGCAAAAAGGAATTTGACGAATATAGCCAGATACGAAAGCACATTCGATCTTTTCATTGCGATCGCAAGTTCATTTGCGAATATTGTCAAAAACAATTTCACACGCAAGACAAACTGAGGATGCATAAGCTCAAGCACTCTGACCACCGCGAGTTCCTGTGCGCAAACTGTGGCAAGCAGTTCAAGCGTAAGGACAAGCTGCAGGAACACATGAAGCGAATGCACACATCCGAGCGAGACCTCAGCAAACAGCCCAAGTCGCCCCGCCCACCGCTGCCCAAGAAGTTCATACCCAAAGTTGTTCTGGGTTCGTCGGACTACGAGCGCTTCATCTTCAAGTGCCACGCGTGCCAGTTGGGCTTCAAGCGGCGAGGCATGCTGGTGAACCACCTGGCCAACCGCCACCCGGACATCACGCCCGACTCGGTGCCCGAACTCAATCTGCCCATCCTCAAGACCACACGCGACTACTACTGCCAGTACTGCGACAAGATCTACAAAAGCAGTTCTAAAAGGAAGGCCCATATTCTGAAGAATCATCCTGGATCGGCATTGCCAATGAGCAATCGTCAAAAGGGCGGAGTGCCGGAGATCCCGGGCCAGCCGAACCCGACATTCTCGCAGACAGTGGGCAGTGTGACGACGACCCCGCACGGCTGTCAGTGGTGCCACAAGCAGTATGCGTCCAAGGCCAAGCTGCTGCAGCACCAGCGCAAGAAGCATCTCAATCTGCTGCCTTCTGAACAACAGCAACCACGACCCGGTAAGTGCATGTCGACTGATATCGATAATCAGCCTGCTCCACCTCCTCCACCGCTTCAGCCAGTCATCGAGCCGAAGCAGGCAGCAGCGCCGACGCCCATTGGTCCGCAGCTGGAAGGGGGCGTGGCCAGTAATGCAGCTGGGGGCGGGGCTACAGCTGTTGCCATGGCAACTGGGCCGGGCGACAACTCAGCCAACGCCATTGCTCTTGCGCCTCATTGCCAGCTGACGCTGTCTGGGCTCACTGACACCATTCTTACTGAATATGAAATAGCAACTGGTGATACGGACATTGCTGAGACGGGAATTGTTATTGATGCGGCCACACTGAAACGTGCAATCAAGAGCGGCGACACCCTGCTAAGCGAGCTGAGTCTGAACCTGGGCGCCTACCTGTCGCAGGAGCAATGCCTCAAGTTGATCCAAGTGGTGGCTGACGAATCGCTCTACTCGCCATACACGCTGCGCTGA
- Protein Sequence
- MNESQPPFTRMASKKPFHRMTHLPPAPSLCPFWCRENFFAGLELSGWADNRYDSVAGRCDVVARNVDRLICWAGAQLVLCSVGLWRNESKVVIDERTCLTPCYPTTTATLPTPITGLSVYCVARHLQLFSTLALCPSEGGVMEDGTKEDEDMGPHEWPPDSSAGKHPDPKLLFLTVEYVGEEAGGFGGGEEAGLMCDLEQRCVSQSLALEGACYSPAAAAFASLAQTQPPSPPPPPPPQHQDDAVFLSDDMVDQQPSQSLITNSSPHHHHHHSSPSSSPLLVAPCSPFPPPPQATSVVTSSPASYVTSQAANYYRQSPRGASGAEYVLPGDGQGDGSLPSDQQMRGLRGDMKVGDGVGQIELLLDDDGVALTVIDPQDSDVIQIPGDCLMPSNQKPSDIGVSGDETNFYDSIKPQGLVVETSENGELRFVSFLDTVETENQLEAIEEQAQSPMTLIIDETISNVSSPAQGESIAANNGPFWCEDCQMSVEAECSLHRVNSIICDKPVPSRARATLPASYLAINLVKPNVYGIFARKTIPNRTQFGPIEGILLKCEDVWTDSPLELLVETETGEMHRLDVSNEDTSNWMRFVQPASSAKEQNLVLSQQGHSLYFTSTRPIHPRQQLLVWYSAAYAAKRHLPQLLEPPQPPPVPEKTYWTCFECNQKFKSSEELQKHLNLHENERVLQEVRNYELMKTRSSSKRNGLQLALREKSQNIDDPPPPKKQVKSSSQQTSFECTACSRSFPRMYSLKRHLLLHYDKKFKCPHCSLEFSHADNRDKHVRKQHSDKCVDLRNIFNSSVNTDKKIDQQWLCKHCNLTFGSASVLNLHTLAHAADNLEGGDSAGEVVGGGLPSDFAHIYHNGEFMVENGSIQCPQCTKLFQTKRELVDHVSTHGRPKQEEEEEEEENGLENFPDENKFGCLYCTRSFDTADCLKQHSLTHVSTAVQCNVCFKRFLNNSALTGHLKSHAILKSFECPICKETFDHMLSLKAHVQGHANNGIFTCPHCKKEFDEYSQIRKHIRSFHCDRKFICEYCQKQFHTQDKLRMHKLKHSDHREFLCANCGKQFKRKDKLQEHMKRMHTSERDLSKQPKSPRPPLPKKFIPKVVLGSSDYERFIFKCHACQLGFKRRGMLVNHLANRHPDITPDSVPELNLPILKTTRDYYCQYCDKIYKSSSKRKAHILKNHPGSALPMSNRQKGGVPEIPGQPNPTFSQTVGSVTTTPHGCQWCHKQYASKAKLLQHQRKKHLNLLPSEQQQPRPGKCMSTDIDNQPAPPPPPLQPVIEPKQAAAPTPIGPQLEGGVASNAAGGGATAVAMATGPGDNSANAIALAPHCQLTLSGLTDTILTEYEIATGDTDIAETGIVIDAATLKRAIKSGDTLLSELSLNLGAYLSQEQCLKLIQVVADESLYSPYTLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -