Nlug002161.1
Basic Information
- Insect
- Nilaparvata lugens
- Gene Symbol
- Zfy2
- Assembly
- GCA_014356525.1
- Location
- chr5:52133456-52145419[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 1.4e-06 0.00022 22.0 0.4 1 21 8 28 8 29 0.97 2 23 5.8 9e+02 1.1 4.2 1 13 37 49 37 52 0.89 3 23 4.6e-06 0.00072 20.3 0.4 1 21 67 87 67 88 0.95 4 23 0.014 2.1 9.4 0.7 1 17 96 112 96 113 0.94 5 23 3.1e-06 0.00049 20.9 0.7 1 21 116 136 116 137 0.96 6 23 0.00065 0.1 13.6 0.5 1 20 144 163 144 165 0.95 7 23 0.00072 0.11 13.4 0.3 1 21 176 196 176 197 0.95 8 23 3.6 5.5e+02 1.8 0.5 1 13 205 217 205 220 0.85 9 23 0.0055 0.86 10.6 1.1 1 14 235 248 235 251 0.86 10 23 1.1 1.7e+02 3.4 0.2 1 9 258 266 258 269 0.86 11 23 1.2 1.9e+02 3.3 0.3 1 9 270 278 270 281 0.86 12 23 0.9 1.4e+02 3.7 0.9 1 9 282 290 282 290 0.91 13 23 0.47 72 4.6 0.5 1 9 294 302 294 306 0.90 14 23 3.4e-05 0.0053 17.6 0.5 1 21 442 462 442 463 0.96 15 23 8e-05 0.012 16.4 0.3 1 21 471 491 471 491 0.95 16 23 1.5e-05 0.0024 18.7 0.2 1 21 492 512 492 513 0.96 17 23 0.89 1.4e+02 3.7 1.0 1 11 562 572 562 575 0.89 18 23 6.7e-06 0.001 19.8 1.8 1 21 598 618 598 619 0.95 19 23 1.4 2.2e+02 3.0 0.8 1 14 627 640 627 642 0.86 20 23 0.0011 0.17 12.9 5.5 1 21 667 687 667 688 0.95 21 23 0.025 3.8 8.6 1.9 1 23 696 719 696 719 0.93 22 23 0.021 3.3 8.8 6.7 1 23 751 773 751 773 0.96 23 23 0.98 1.5e+02 3.6 2.9 1 23 780 803 780 803 0.86
Sequence Information
- Coding Sequence
- ATGACTGCAGAAGAGATCAGGTACCCGTGCAATAGATGCGGCAGAACGTACAATATGAAAAGCAATTTGCAAAGACACATAAGAGATGAATGTGGAGTGGAGCCGAAATTCTGTTGTCCCCACTGCAACTACAGATCGAAACGGAAGGTTTTTAATGAGCAAGACGAAGACTTGATGCTGATTGGAGAGGAGATTCGGTATCCATGTGGAAGATGTGGCAAAACCTACAAATATAAAGGTGACTTGAAGAGGCACTTGAAAGTAGAATGTGGAATGGAACCGACATTTATTTGTTCTTACTGTGATTACAGAGCTAAGCGGAAAAGCCACCTCAAAGAGATAAGGTACCCCTGTGAACGGTGTGACAAAACCTACAAAAATAGATCGGAGATGAGGCGGCACATGAAAGAGTGTGGATTGGAGCCGAGGTTCCCGTGTCCCCACTGCGCTTACAGAACGAGACGGAAGGCTGACCTCAAATCACATCAAGAGCAAGACTTGATGCTGATTGGAGAGGAGATTCGTTATCCATGTGAAAGGTGCGGCAAAACCTACAAAGAGAAGAGAGTCATGATGAGGCACTTGAGAGTAGAATGTGGCATGGAACCGAGATTCTCTTGTCCTAACTGTACTTACAGAGCAAAACGGAAAAATAGTGCTGAAGAATTCCACATGATGGTAATAAATGGAAGGGAGATCAGGTATCCATGTGAAAAATGTGGCAAAACCTACAAACAGAAACACTTGAAAAATTGTGGATTGGAATCAAGATTCGCTTGCCCCCACTGTCATAGATCACGGGCAAGATTTGCTTGCCCCCACTGTCATAGATCACGGCCAAGATTCACTTGCCCCCACTGTCATAGATCATGGCCAAGATTCACTTGCCCCCACTGTCATAGATCACGGCAAGATTCGCTTGCCCCCACTGTCATAGATCACAGGCAAGATTCGCTTGCCCCCACTGTCATAGATCACGGCCAAGATTCGCTTGCCCCCACTGTCATAGATCACAGGCAAGATTCGCTTCCCCCCACTGTCATAGATCACAGGCAAGATTCGCTTGCCCCCACTGTCATAGATCACAGGCAAGATTCCACTGTCATAGATCACAGGCAAAATTCGCTTGCCCCCACTGTCATAGATCACAGGCAAGATTCCACTGTCATAGATCACAGGCAAAATTCGCTTGCCCCCACTGTCATAGATCACAGGCAAGATTCTCTTGCCCCCACTGTCATAGATCACAGGCAAGTTTTGCTTGCCCCCACTGTCATATTTTTTGATGAACAATTCTCCATGGTGACTGGAGAGGAGATGAGGTATCCATGTGAAAAATGCGGCAAAACCTACAAACTGAAAGGCGATATGAAGAGCCATATGAAGAATGATTGTGGATTGGAACCGAGATTCGCTTGTCCCCACTGTCCTTATAGATCACGGCGAAAGGGCGACCTCAAAGCTCATATAAAGTACCCATGTGAAAAGTGCGGAAAACCCTACAAAGTGAAAGCTGAAATGCGGAGGCACATGAAAAACTATTGTGGAGTGGAACCGAAATTTCACTGCTCCTTCTGTCCTTACAAAGCTAAAAGGAATACTGATTTTGACAGAGACTATGACGTTATAAGAGAGGAAATCGACCAGTGTGACGTGGCCAAGGTCATTGAGGAAGCTGTCAGGTTTTCGTGTGGAAGATGTGGAAAGTCGTACGCTTATTTTAACCGAAACATTTTGTTGGGAGAAGAACTTGAACAGAATGACTTCGTTTCCAATAAAAAAAGTGGCAGGTTTCCCTGTGAACGGTGTGGAAAATCGTACAGTAAAAAGTATAACTTGACAGTTCATCAGAAGCACGAGTGTGGAGTGGAACCGAAGTTTCTTTGTCCACATTGTTCTTACAGGACGAAACGGAAGGGGACCAATTCCAGCAAAACTGATTCTCATCAGGGAGAATTTGGAGAAGTTGACACAAGTGGGAGGGAGGAAAATAGAAAATTTCGTTGTGAACGGTGCGGCAAGTCGTACAAACAAAGATGCAATTTGTATGTTCATCACAAATATGAGTGCGGAGTGGAGCCTCAGTTCTTCTGCTCTTATTGTCCATACAAGTCAAAGCGAAAGGGACCTCTTTTGAACCATGTTTTTCGAAAACACACACATTCGGAATTACAATTAGTTCCAAAATACTTTTGTATTGAAAATTGGATTTCTATATATAGGTTGCTTGATGACGACAAAGAAGGAAGATATCGCTGTCCCAAATGCAACAATACGTATAAGAGCAAATACTTCCGCAACCATCATTTGAAAAACCACTGTGGTCTGGAGCCCAAGTTCAAATGCCCCCTGTGCGACTACAAATCCAAATGGAAATCTGATTTGAAATGCCATGTCCTCAATAGACATTCTAATTACAAGAACTGA
- Protein Sequence
- MTAEEIRYPCNRCGRTYNMKSNLQRHIRDECGVEPKFCCPHCNYRSKRKVFNEQDEDLMLIGEEIRYPCGRCGKTYKYKGDLKRHLKVECGMEPTFICSYCDYRAKRKSHLKEIRYPCERCDKTYKNRSEMRRHMKECGLEPRFPCPHCAYRTRRKADLKSHQEQDLMLIGEEIRYPCERCGKTYKEKRVMMRHLRVECGMEPRFSCPNCTYRAKRKNSAEEFHMMVINGREIRYPCEKCGKTYKQKHLKNCGLESRFACPHCHRSRARFACPHCHRSRPRFTCPHCHRSWPRFTCPHCHRSRQDSLAPTVIDHRQDSLAPTVIDHGQDSLAPTVIDHRQDSLPPTVIDHRQDSLAPTVIDHRQDSTVIDHRQNSLAPTVIDHRQDSTVIDHRQNSLAPTVIDHRQDSLAPTVIDHRQVLLAPTVIFFDEQFSMVTGEEMRYPCEKCGKTYKLKGDMKSHMKNDCGLEPRFACPHCPYRSRRKGDLKAHIKYPCEKCGKPYKVKAEMRRHMKNYCGVEPKFHCSFCPYKAKRNTDFDRDYDVIREEIDQCDVAKVIEEAVRFSCGRCGKSYAYFNRNILLGEELEQNDFVSNKKSGRFPCERCGKSYSKKYNLTVHQKHECGVEPKFLCPHCSYRTKRKGTNSSKTDSHQGEFGEVDTSGREENRKFRCERCGKSYKQRCNLYVHHKYECGVEPQFFCSYCPYKSKRKGPLLNHVFRKHTHSELQLVPKYFCIENWISIYRLLDDDKEGRYRCPKCNNTYKSKYFRNHHLKNHCGLEPKFKCPLCDYKSKWKSDLKCHVLNRHSNYKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -