Nlug002162.1
Basic Information
- Insect
- Nilaparvata lugens
- Gene Symbol
- lola
- Assembly
- GCA_014356525.1
- Location
- chr5:52021369-52048136[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0004 0.063 14.2 0.8 1 21 74 94 74 95 0.96 2 17 3.3e-05 0.0052 17.6 2.9 1 23 103 126 103 126 0.95 3 17 0.027 4.3 8.5 1.4 1 20 176 195 176 197 0.87 4 17 0.061 9.5 7.4 3.6 1 23 205 228 205 228 0.93 5 17 0.00035 0.055 14.4 2.2 1 21 245 265 245 266 0.95 6 17 0.00025 0.04 14.9 2.9 1 23 274 297 274 297 0.94 7 17 0.0035 0.55 11.3 6.7 1 21 335 355 335 356 0.95 8 17 0.00068 0.11 13.5 1.5 2 23 365 387 364 387 0.94 9 17 6.2e-06 0.00096 19.9 2.1 1 20 394 413 394 415 0.95 10 17 4.4e-05 0.0069 17.2 1.2 2 23 424 446 423 446 0.96 11 17 6.2e-06 0.00096 19.9 2.1 1 20 454 473 454 475 0.95 12 17 1.7e-06 0.00027 21.7 3.4 1 21 500 520 500 521 0.95 13 17 0.001 0.16 12.9 4.1 2 22 530 550 529 550 0.95 14 17 6.1e-06 0.00095 19.9 1.8 1 21 547 567 547 568 0.94 15 17 0.00056 0.088 13.8 0.9 2 23 577 599 576 599 0.92 16 17 0.0065 1 10.4 0.3 1 21 635 655 635 656 0.91 17 17 0.00039 0.06 14.3 1.9 1 21 664 684 664 687 0.91
Sequence Information
- Coding Sequence
- ATGTCAATTGGAAACCATCATTTTTGTTCTAAGAGTTTGATGTTGCAGGCAACGCTACTGTATTGGAACAGGTTTTTTCATTTCAATAATTCTGTGTGTGAACTCTGTGTTTTTGTATTTTTCAATAGAGAAATGTGTACTGATAATGAAGGTATTCTAAAATTTACTAAAACACTGTTTTACAGTAAAGGCATGTCGACGGATAATGGATTGGAGAGTTATGAGTGTCCCCAGTGTGCAAAGAAATATCGTCAGAGGAGAAACATGATGACTCATCTGAAGAACGAGTGCGGAAAATCTCCATCCTTTCAGTGTCCCCACTGTCCTCACAGAACTAAACAAAAGGGAAACCTCAACACTCACATTGCTTTGAAACACACCAATATTTTATCATTAATCTCACAACGTTTTCCAGATCCGTTCCAGGGGCTACCAGGGCACAATCCGACGTTTCTCAGAAACGTTGCCGTGGTTTCCCAGCAGCCACCATCAACCGACCAAATCGACGGAAACCAGTTGGGCGAGTACCCCTGCCACAAGTGCGGCAAAGTCTACCTGCACAAGGCCAGTCGCCGCGTCCACACGCTCTACGAGTGCGGAAAAGATCCAAATTTCAAGTGTCCGTTTTGTGCGCACAGGTGTAAACAGGTGGGAAATATGCGCAGGCATGTGGCACTCAAACACACCGACATTGTCAAGATTGACTTCCAAGTGATTAATGACGAAGTTAGATACCCATGCAGCCAGTGCGGTAGAACGTATCGGTTCAAAAGAGACATGAGACACCATTTGAAGAACGAGTGCGGAGTAGAGCCGAGATTTGCGTGTCCATACTGTTCCTATAGATGCAAGCGCAGGAGATCTCTCAAAGTTCATATTGCTAACAGACATTATAACAGTTCGATCCACAGCAGTTTGCAACATTCACTGAATGACCTCTCACATGAATATTCTCCAAATTCAGTCTCCAACAATCTGCTATCAAGTGTGCTTCACAAAAATCACGTTTGTCCCAACTGTAACAAATTCTATAAGCACAAAACCAGTTTGCACACTCACCTGAAACATGAATGTGGAAAGGAAGCGAATTTAGTCTGCGAATATTGTAGCTACAAAACAAAGCACGTTGGAAATCTGAAGCGGCATATTTTACTCAAACACACAATAATCAACAATAATTTCGAGTGTTCCAAATGTGGGAAATGTTATAAATACAGAAGGAGCCTGAAAGCACACATGGATGTGGAATGTGGGAAGGAAGCTCAGCTGCAATGTCCTTACTGTGAGCATCGCACCAAAGTTAGAAGCAACTTGAGAGCGCATATAGCTACTAAGCATTGCCCAATAATCAACAATAATTTCGAGTGTTCCAAATGTGGAAAGTGTTATAAATACAGAAGGAGCCTGAAAGCACACATGGATGTGGAATGTGGGAAGGAGCTCAGCTGCAATGTCCTTACTAATTTACATTTTGCAATTATTTTCACAGTTGAATGTTTCAAATGCAAGCAATGTGGGAAGAGTTACCGACACAGGAGTAGTCTGAACAAACATGTGAAGAATGAGTGTGGCAAGGACCCTCAAATGCAGTGTCCATACTGCTCTCACCGCACCAAGCACAAAGGAAATCTTAAATCACACATTTGCACCAACTGTGGGAAACGTTACAAATACAAAAGGAACTTGCAAACTCACATGAAGCTGGAGTGCGGGAAGGAGCCCCACCTGAAGTGTCCCTACTGCGAGCATCGCACCAAGATCAGGAGCAACTTGAAAGCGCACATCGCTGCTAAGCATTTCGACATTATCTTGATTTTGCTGACATCTTTCACATCAGAACTAGCCATCAGCAATGCCAATCAGCATCATCATCATCAGCAGCAATCAGCGGCTGACAAGAAGCACGCATGCCGCAACTGCGGCAAGGTCTATGCGCTTGCGTCGTCGCTCTACACGCATGAGAAGTACCAGTGCGGCAAGGAGCCGCAGTTCAAGTGTCCCTACTGTCCGCACAAAACCAAGCTCAAGGGCAATCTCAAGGCGCACATTGGCTTCAAGCACTCCAACATGCCTAAGGATTTCTGA
- Protein Sequence
- MSIGNHHFCSKSLMLQATLLYWNRFFHFNNSVCELCVFVFFNREMCTDNEGILKFTKTLFYSKGMSTDNGLESYECPQCAKKYRQRRNMMTHLKNECGKSPSFQCPHCPHRTKQKGNLNTHIALKHTNILSLISQRFPDPFQGLPGHNPTFLRNVAVVSQQPPSTDQIDGNQLGEYPCHKCGKVYLHKASRRVHTLYECGKDPNFKCPFCAHRCKQVGNMRRHVALKHTDIVKIDFQVINDEVRYPCSQCGRTYRFKRDMRHHLKNECGVEPRFACPYCSYRCKRRRSLKVHIANRHYNSSIHSSLQHSLNDLSHEYSPNSVSNNLLSSVLHKNHVCPNCNKFYKHKTSLHTHLKHECGKEANLVCEYCSYKTKHVGNLKRHILLKHTIINNNFECSKCGKCYKYRRSLKAHMDVECGKEAQLQCPYCEHRTKVRSNLRAHIATKHCPIINNNFECSKCGKCYKYRRSLKAHMDVECGKELSCNVLTNLHFAIIFTVECFKCKQCGKSYRHRSSLNKHVKNECGKDPQMQCPYCSHRTKHKGNLKSHICTNCGKRYKYKRNLQTHMKLECGKEPHLKCPYCEHRTKIRSNLKAHIAAKHFDIILILLTSFTSELAISNANQHHHHQQQSAADKKHACRNCGKVYALASSLYTHEKYQCGKEPQFKCPYCPHKTKLKGNLKAHIGFKHSNMPKDF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -