Nlug007201.1
Basic Information
- Insect
- Nilaparvata lugens
- Gene Symbol
- -
- Assembly
- GCA_014356525.1
- Location
- chr10:32510050-32515269[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-11 2.7e-09 37.1 0.0 1 40 26 65 26 69 0.92
Sequence Information
- Coding Sequence
- ATGTCAAAACAAACGGTTTTCAACATGACAAGGAAATATAAGCCAGTCCTTGGGCCAACTGGCCACAAGAAATATAGTGAAGAATCACTTCTAAAAGCTGTAAGAGAGGTGAAGACTGGATTACTAACGATACGTAAAGCTGCAGAGAAACATGGGGTCCCAAGGTCTACGCTATCAGATTATCTGAAAAGAAGCCGTTCAGGACAAATGCATCGTAAACCGGGGGGACAACCTGTTTTGTCAAACAATGATGAACAATGTTTGATGGATGGACTCCTTGTATGTGCAGAGTGGGGTTACCCACTACACGCTGCAGACGTGAAAGATGTTGTGCAGTCTTTTCTGAACCGGGAGGGTAGGGTAGTGAAGCGTTTCAAAGACAATAGGCCTGGAGAGGATTGGACTTGGAATTTTTTAAAAAGACACCCCCAACTGACCAATAGGTTCGCGGAGAACATCAAGAGGTGCAGAGCAGCAGTTGATGCTGAGGCAGTAAAAAGCTATTTTGAACACTTAGACAAAACTCTTGAGCCTGAAGGAAGTGCTGCAATTCCACCTGAAAATTGGGTGAACTTCGATGAAACAAATTTTTCCGATGACCCCGGATCCAAAAAAGTAATTGTGCGTCGAGGCTGCCGCCGTCCAGAAAGAATAATGGACCACTCTAAAAGCTCCACTAGTGTTATGATGGCAGTAAATGGGAGGGGTGATCTACTGCCACCATTCACTGTGTACAAATCTCAATTTTTGTACCCCACCTGGATAGAGGGTGGTCTCCCAGGAATGAGATATGGATGTAGCAAGAGTGGGTGGTTTGACATGCGCCTGTTCGAGGAATGGTTCATCACGGTGGCCCTCGTCTATTTTCGTGACAAAGTGGGGAGAAAGTTGTTGATTGGTGACAACCTAGCCAGTCACTTCTCAGCTGAGGTTATAAGACTGTGTAAGCTGAATGGCATTGATTTTGTTTTCTTCCGCCAAATTCTACCCACTTATTCCAGCCTTTTCAGAAGCATGAAAGCTGCCTGGCGTAGCACATTAGGAGAGTGGAAGAAGAGGAACAGAGGTGCTGTGCAAAAATCTGTGTTCCCCAGACTTTTGCGTGAAGCTATAGAATCCATGGGGGACAAACTTCGAGCGAACATCATTGCTGGATTTAGGGCTACTGGTCTAATCCCATTAGACAAAGAGGAGGTGCTCAAGAAGCTACCTAAGCAAGCAGATGATACTTCACCAAATTGGTGCGATGCTCTAAGAGAAAAGTTGGAGGAGACACGAAAAGGTGACACTCCTAAAAGTCGTGGGAAACGCGTGACTGTCCATCCAGGGCAGAGCATCACAACAACATGTTTGAATAATGACACCGACAATAACGTCCTGCAAACTGTTATGGCTGAAGAGGAAGGAATCTTTGCATCTGAGTCTGAAGAAAGTGATGCTGGCACCTCCCATGAAGAGCTGGTCGACATCCCTGATGAGCACAAGGCTGAAGGTGACTTCGTCCTTGTTAAATTCGTGACACAAGAAGATAACCGGGACAAAGTTTATGTTGGAAGAATCGAAAACATCCTTGATACAGAGAACACCGAATATGAAATTCGATTTTTAAGAAAGAAGGATGGAAAAAAGGAGATTACTTTCAGTTTTCCTGATATCCCAGACATTGAAACTGTGTCACTGGGATCAATCATAACAAAACTGAAACCCAAAAAACTGCGTAGAGAAAAGTTCATGTTCCCTGGACTAGAAGACTTTATAAATTGA
- Protein Sequence
- MSKQTVFNMTRKYKPVLGPTGHKKYSEESLLKAVREVKTGLLTIRKAAEKHGVPRSTLSDYLKRSRSGQMHRKPGGQPVLSNNDEQCLMDGLLVCAEWGYPLHAADVKDVVQSFLNREGRVVKRFKDNRPGEDWTWNFLKRHPQLTNRFAENIKRCRAAVDAEAVKSYFEHLDKTLEPEGSAAIPPENWVNFDETNFSDDPGSKKVIVRRGCRRPERIMDHSKSSTSVMMAVNGRGDLLPPFTVYKSQFLYPTWIEGGLPGMRYGCSKSGWFDMRLFEEWFITVALVYFRDKVGRKLLIGDNLASHFSAEVIRLCKLNGIDFVFFRQILPTYSSLFRSMKAAWRSTLGEWKKRNRGAVQKSVFPRLLREAIESMGDKLRANIIAGFRATGLIPLDKEEVLKKLPKQADDTSPNWCDALREKLEETRKGDTPKSRGKRVTVHPGQSITTTCLNNDTDNNVLQTVMAEEEGIFASESEESDAGTSHEELVDIPDEHKAEGDFVLVKFVTQEDNRDKVYVGRIENILDTENTEYEIRFLRKKDGKKEITFSFPDIPDIETVSLGSIITKLKPKKLRREKFMFPGLEDFIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01059715; iTF_01059710; iTF_01059697; iTF_01059700; iTF_01059702; iTF_01059703; iTF_01059704; iTF_01059705; iTF_01059707; iTF_01059708; iTF_01059709;
- 90% Identity
- iTF_01059710; iTF_01059700; iTF_01059702; iTF_01059703; iTF_01059704; iTF_01059705; iTF_01059707; iTF_01059708; iTF_01059709; iTF_01059715;
- 80% Identity
- -