Nlug012744.1
Basic Information
- Insect
- Nilaparvata lugens
- Gene Symbol
- bab1
- Assembly
- GCA_014356525.1
- Location
- chr12:28945140-28955916[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8 1.5e+03 -0.5 0.3 17 32 159 174 158 176 0.92 2 2 4.1e-13 7.6e-11 42.0 0.1 1 45 418 462 418 462 0.95
Sequence Information
- Coding Sequence
- ATGGCAGCCAGTGGAAGTTCGCCAGCTGCATCAGGTGCAGCCGCCCAGCAGTACTGTCTGCGCTGGAACAACCATCGCTCCAACCTGCTGACCGTCTTCGACCAGCTGCTGCAGAATGAGGCATTCACCGACGTCACCCTCACCTGCGAGGGGGGCACCTCTGTCAAGTGCCACAAGATGGTGCTGGCTGCTTGCTCCTCCTACTTCCAGGTGCTCTTCACCGAACTGCCTTGCAGGCACCCAGTGGTTGTTCTAAAGGACGTGCGCTACAGCGAAATGAAGGCGATCCTGGAGTACATGTACAGGGGTGAAGTGAATGTGGCCCAGGACCAGCTGGGAGCCCTGCTCAAGGTCGCCGAAGCACTCAAGATCAAGGGCCTAGTCGAAGACAACACAACTGCCGCCGCAACCGCAACGAAAACGCAGTCAGGTGCGGGAGGCAACGGTAACACGGCAAGTGATGACCCGAACGTGATCAGCACCTCCTCAGCAGCCAATGCCTCCTCAGTGCCTCACAGCAGCGGTTTGAGTCATAACAGCGATGATGCGTCTCCTCCTCACTCCACACCCTATGCCACGCCCCACTCCACCGGAATACACCAGCAACCTGCCATGCCCAAGAGTCCATACATGTATGGCGGCGGCAAATCGTCGATGCTAGACCGCAGCGGCGTCTCGATGCCCCTGTGGGGCCTCCCGCTAGCGGCACCGCCGTCGCAACACCGCGGGGGCAACAACAACGCGACCGCAGCCGCAGCACTCAACAGCGCGACTGCAGCCGCACTCAACAACTGCTACAATGCGGCCGCCATGTTCAGCTCGGACATGTCGCCGCTCAGTCGCAAAAAGCTATCGTCCATGATGGCCAGTCGTGACACCCCGATTCTGCGCACTGTGCTCGGCCAGGGGGGAGCCCAAGGGGGCCAGGGGGGCACACAGGGGGGCCCCGGCCCCGACTCGTCGCAGCCCGTGCCCCTCGTCTGTCGGCCCGACAGCCACTTGTCCAATCACAACGACTGCTACAGTCAGGATGCCGAAACGTCTGTTAAATCTGAACAAATGCATGAAGATACTGCCTCTCCCTATACTGATATTTCTGCTATGGATGAAGATGAAAAGAACAACAAATTGGCCTTCATGCACTCAACGTCTCCTCAGTCAATGTACAACGACGGAACAGGAGGCGTCTCATCAGCGATAGCCACCTACGTGCCAACCCAGAAACCAGAATGGAAACGCTACAAGCAGTACACCCGCGCCGACATCCTGTCAGCGATTGAGGCGGTGCGCCTGGGCATGAGCGCACTGCAGGCGGCGCGCAAGTACGGCGTGCCGTCACGCACGCTCTACGACAAAGTCAAGAAGCTCGGCATCACCACGTCGCGGCCTTTCCGACGCGGCAGTGCCAACGGTAACGGCAACCCAGGTGGCGGAGGCAGCACGGGAGGGGGAAACCACAGTGGCAACAGTTCGTCGCCCAACAACGTGCGCTCTCCCAGCCCAAACCTCATCAAGTACGCGCATGCGCATCGCAACAGCATCACCCCCTCCCCTTCACAGCAGAGCCAGGGTGGGGATGAGGACGACGATGACGAGGAGAGGGGAGCCAACGATAAGGACGACGAGGACATGATGCAGGACCAGGTGGAGGATTTGTCGGTCAGTCGGAAAACAGCTGACTCGCAACCCCCTCCACCGCCATCTAGAGTCATTATGCCCCCCATGAGTGAGGCCACTGCGGCCCTGCTCACTACGGGCAGTGACTCACATCAGAGCAGTAGAGACTGA
- Protein Sequence
- MAASGSSPAASGAAAQQYCLRWNNHRSNLLTVFDQLLQNEAFTDVTLTCEGGTSVKCHKMVLAACSSYFQVLFTELPCRHPVVVLKDVRYSEMKAILEYMYRGEVNVAQDQLGALLKVAEALKIKGLVEDNTTAAATATKTQSGAGGNGNTASDDPNVISTSSAANASSVPHSSGLSHNSDDASPPHSTPYATPHSTGIHQQPAMPKSPYMYGGGKSSMLDRSGVSMPLWGLPLAAPPSQHRGGNNNATAAAALNSATAAALNNCYNAAAMFSSDMSPLSRKKLSSMMASRDTPILRTVLGQGGAQGGQGGTQGGPGPDSSQPVPLVCRPDSHLSNHNDCYSQDAETSVKSEQMHEDTASPYTDISAMDEDEKNNKLAFMHSTSPQSMYNDGTGGVSSAIATYVPTQKPEWKRYKQYTRADILSAIEAVRLGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFRRGSANGNGNPGGGGSTGGGNHSGNSSSPNNVRSPSPNLIKYAHAHRNSITPSPSQQSQGGDEDDDDEERGANDKDDEDMMQDQVEDLSVSRKTADSQPPPPPSRVIMPPMSEATAALLTTGSDSHQSSRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01060025;
- 90% Identity
- iTF_01060025;
- 80% Identity
- iTF_01060025;