Nlug011731.1
Basic Information
- Insect
- Nilaparvata lugens
- Gene Symbol
- lz
- Assembly
- GCA_014356525.1
- Location
- chr1:16317319-16362244[+]
Transcription Factor Domain
- TF Family
- Runt
- Domain
- Runt domain
- PFAM
- PF00853
- TF Group
- Beta-Scaffold Factors
- Description
- The AML1 gene is rearranged by the t(8;21) translocation in acute myeloid leukemia [1]. The gene is highly similar to the Drosophila melanogaster segmentation gene runt and to the mouse transcription factor PEBP2 alpha subunit gene [1]. The region of shared similarity, known as the Runt domain, is responsible for DNA-binding and protein-protein interaction.In addition to the highly-conserved Runt domain, the AML-1 gene product carries a putative ATP-binding site (GRSGRGKS), and has a C-terminal region rich in proline and serine residues. The protein (known as acute myeloid leukemia 1 protein, oncogene AML-1, core-binding factor (CBF), alpha-B subunit, etc.) binds to the core site, 5'-pygpyggt-3', of a number of enhancers and promoters.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-51 3.9e-48 162.7 0.0 3 93 47 137 45 150 0.96 2 2 2.5e-19 8.7e-16 58.1 0.0 73 129 164 219 139 219 0.83
Sequence Information
- Coding Sequence
- ATGCATCTGCCGGGGATCATGACGTCGGATCCGTGCGGCAAGAAGCGTCGCCGCTGCGTGGAGGCGGCGGGCGGGGAGACGGGGGCGGCGCCTGGAGGCGGCAGTGACGAGTTGTGGTGGACGGAGCGAGTTCTGTGCGAGGCCCAAGCGGAACACCCGGGGGAGTTGGTCCGCACCGGAAGTCCGGGCTTCCTGTGTTCGTCGCTGCCTACGCACTGGCGCTCCAACAAGACGCTACCCGTCGCCTTCAAGGTGGTCGCCCTGGGTGACGTCATGGACGGCACGGTCGTCACCATCCGCGCCGGCAACGACGAGAACTTCTGCGCCGAACTTCGCAACTGCACCGCCGTCATGAAGAATCAGGTGGCCAAGTTCAACGACCTGCGATTCGTCGGCAGGAGCGGCAGAGGTGGCTGTGATGGTCATACCTACCTGGTCATGGGGAGAGAGAGAGTGTGTGTGTGTGTGAGAGAGAGTGTGACAGAGGGGTTGTTGAGCAAATGGTTAGCAGCAACCGGCGACATGCGAATTACATGTCGTAGTAACGGGAAGAGCTTCACAATAACGATAACGGTCGCCTCGTGTCCACCTCAAATTGCAACTTACAATAAAGCAATAAAAGTCACCGTCGACGGACCAAGAGAGCCTCGTTCTAAAACAAGGCAGGCACACCAGTTTCGAGCGATCGGGCTCGGCCAGCGACCCTTCCTCGACTCGTCGACGTTCTCGTGTCATCTGCGGGAGCTCGGCACCTATCGGCGCAACAAGGAGCACGCTGCCTCCTCCTCCCCGGAGCCACCCTCCCACGCTCAGTACAAGATGCCAGGACCTTCCACGCCTGTTAACGTTCTGCATGGCCGGTCGAGAAAATCGTCAAACGATAGGAGCTTAGGAGCAAGGAGGCATAAATCCATGCGGCACGACTACGTGGCCCATCTGCCTGTAACCAAGGTACCGTTGCGTTGGCGTGATTCGAACAGCCTGGGCCTGACGATGGAGCAGGGCAGCTGGGGCAGTTACAACAACGCCTACTCGCCGGGGCCGGGGCCAGGCCCCACCGCCAACTCTGCCGCCCCCGTGCCCTACTCCTATCCGCCCCCCGCCAACTCAGACCTCGATCCCAACATCACTGCTCATCTACCCACAGTTGCAGATCACACTTCGTTGGGTGGTGATTACTCGAGCATGTACAAGCCGAGCTGCAGTCCGGCCGAGCAGATGGAAGTGAGCAACATGGCGGTGATGCAGTCACACCATCACCAGGCAGCGCCATCGGGAGGCGGCGGAATGGCCTACGACTCCTACCAGTCGGGGGCGGCAGCCAACAACTACTGGGCACCGCCACCTCCAGCCGCCTCCGCCAACATGCACCACGGCTACCACAACTACTACCCGAGCAACCCGGTCGCCGCCCCCGCACCTGTACAGAACGCCTACCTCAACGCACCGCCCCCGGCCCCCGCGCCACCACCCATGGTGCTCTACCCGTCGCTGTACTCCACCGTCAACCAGAACCAGATCCACCTTCATCTGCACTCCAACGACCTCAAGCCGAGTGACCCCTACACCGATGACGTCACCGCCATTGTCGCCTCTAACAACGTCACCATCAGCTCGGCCGGCGGATCCCGGCAGATCGAGATCGGCATCCGTCACAACCAGCTCACCGACGACCAACTCATATCCAGGTACAACGAGCGCCAGCACGGCGACCCCTCTGTTTGGAGACCCTACTGA
- Protein Sequence
- MHLPGIMTSDPCGKKRRRCVEAAGGETGAAPGGGSDELWWTERVLCEAQAEHPGELVRTGSPGFLCSSLPTHWRSNKTLPVAFKVVALGDVMDGTVVTIRAGNDENFCAELRNCTAVMKNQVAKFNDLRFVGRSGRGGCDGHTYLVMGRERVCVCVRESVTEGLLSKWLAATGDMRITCRSNGKSFTITITVASCPPQIATYNKAIKVTVDGPREPRSKTRQAHQFRAIGLGQRPFLDSSTFSCHLRELGTYRRNKEHAASSSPEPPSHAQYKMPGPSTPVNVLHGRSRKSSNDRSLGARRHKSMRHDYVAHLPVTKVPLRWRDSNSLGLTMEQGSWGSYNNAYSPGPGPGPTANSAAPVPYSYPPPANSDLDPNITAHLPTVADHTSLGGDYSSMYKPSCSPAEQMEVSNMAVMQSHHHQAAPSGGGGMAYDSYQSGAAANNYWAPPPPAASANMHHGYHNYYPSNPVAAPAPVQNAYLNAPPPAPAPPPMVLYPSLYSTVNQNQIHLHLHSNDLKPSDPYTDDVTAIVASNNVTISSAGGSRQIEIGIRHNQLTDDQLISRYNERQHGDPSVWRPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -