Basic Information

Insect: Nicrophorus vespilloides
Gene Symbol: -
Assembly: GCA_001412225.1
Location: NW:17096-21126[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.062 4.3 7.4 2.6 1 23 76 99 76 99 0.95

2 18 4.7 3.2e+02 1.5 1.2 2 10 129 137 128 149 0.72

3 18 0.18 12 6.0 2.7 3 23 154 175 153 175 0.94

4 18 0.43 29 4.8 0.0 2 20 280 298 279 300 0.91

5 18 0.072 4.9 7.2 0.5 2 23 432 454 431 454 0.95

6 18 0.48 33 4.6 0.4 1 9 491 499 491 513 0.78

7 18 0.013 0.89 9.5 3.3 1 19 559 577 559 577 0.98

8 18 0.17 11 6.1 0.5 1 22 588 609 588 611 0.82

9 18 0.022 1.5 8.8 0.9 1 23 617 642 617 642 0.93

10 18 4e-05 0.0027 17.5 1.0 2 23 657 678 656 678 0.96

11 18 3.4 2.3e+02 1.9 1.3 1 13 682 694 682 705 0.80

12 18 0.063 4.3 7.4 6.3 1 23 711 733 711 734 0.96

13 18 2.9 2e+02 2.2 0.1 3 23 742 761 741 761 0.82

14 18 1.1e-06 7.4e-05 22.4 3.8 2 23 767 788 766 788 0.97

15 18 8.2e-05 0.0056 16.5 0.9 1 23 794 816 794 816 0.95

16 18 3e-06 0.0002 21.0 0.6 2 23 823 844 822 844 0.97

17 18 2.3e-05 0.0016 18.2 0.6 2 23 851 873 851 873 0.93

18 18 0.048 3.2 7.8 2.9 5 23 886 905 885 905 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.062	4.3	7.4	2.6	1	23	76	99	76	99	0.95
2	18	4.7	3.2e+02	1.5	1.2	2	10	129	137	128	149	0.72
3	18	0.18	12	6.0	2.7	3	23	154	175	153	175	0.94
4	18	0.43	29	4.8	0.0	2	20	280	298	279	300	0.91
5	18	0.072	4.9	7.2	0.5	2	23	432	454	431	454	0.95
6	18	0.48	33	4.6	0.4	1	9	491	499	491	513	0.78
7	18	0.013	0.89	9.5	3.3	1	19	559	577	559	577	0.98
8	18	0.17	11	6.1	0.5	1	22	588	609	588	611	0.82
9	18	0.022	1.5	8.8	0.9	1	23	617	642	617	642	0.93
10	18	4e-05	0.0027	17.5	1.0	2	23	657	678	656	678	0.96
11	18	3.4	2.3e+02	1.9	1.3	1	13	682	694	682	705	0.80
12	18	0.063	4.3	7.4	6.3	1	23	711	733	711	734	0.96
13	18	2.9	2e+02	2.2	0.1	3	23	742	761	741	761	0.82
14	18	1.1e-06	7.4e-05	22.4	3.8	2	23	767	788	766	788	0.97
15	18	8.2e-05	0.0056	16.5	0.9	1	23	794	816	794	816	0.95
16	18	3e-06	0.0002	21.0	0.6	2	23	823	844	822	844	0.97
17	18	2.3e-05	0.0016	18.2	0.6	2	23	851	873	851	873	0.93
18	18	0.048	3.2	7.8	2.9	5	23	886	905	885	905	0.95

Sequence Information

Coding Sequence: atgGATGTTGAAGAAGATGATCAAGTTATCCGTAAATCGAGCGTATCGATCAACACGAAGAAGAAATCTGGAAAGAGGAacattatttcgtttttacCGCCGAAGAAGCGAGTTCATAACGTCGAAGAATCGCTCGACAGAGTTTACATGTTCCATCGTTTGGTCGCGTTCCCTAACGACGATTTGGCTCTGCAGAATAAATTCAACGCGAAGAGAGACCTCAAATACATCTGCAACTTTTGCGAAAAACCGTATTTCAATCATATGAAGATGAAGCTGCACATGCTTTTAAACCACGACGTGAAATATTGCAAGATCTGCGATCTCTTCCTGTTGGACGAGGAAGATGTGCGGAGACACAACGAGAACGTGCACGCGTATTGCAAGTGCCAGATATGCCAGAAGAGCATTACTGAAGACCTCGAAGAACATTACATGGAAAACCACGACGCGAAGATCTGCAAGTACTGTCACCAGGTGATGCGACCTTCTAGCCACTACGAAACGCATTTACTGGAGAAACACGGTGTCAAGAAGAATGGTTTAGTCTCGATGCACGAGGAAAATATCATTGGGATATCGGACGGaatcaattttcattgcaACCTGTGCGGACCCGCTTGCAACAAGCTGTTCTTTGGGCACTTCTGTTATTACCACAAGATCAACATCTACGTTCTGGCTGATATATTGAAAAGACTCGACATCGAGATCAAGCAGTTCAACACGATCAAAACGGACGAATTGGAGATCATCGTGGGAAACGATAAATTCTGCAATTTATGCCCGAAAACCGTTCCCAAATCATTCCATCGAGTCTTCTGCGAAAACTATCTACCTTGCAAGCTGTGCTTCGAAATCTTTGAAAACACCGAACTTTTAGCAGATCACGAGAAAGAGACGTGCGCTAGTAGAGATGAAAGCCAGTGCGGATTGTGCAAAGAAAACTTAACGGAAGACCATTTGATGATTAAACACAAAACATCTGTATTCGAGCGTAAATTGATCAATTACAAGTGCAATTCGGTGTATTGCGCTTTGTGCGATCAATTGTTAAACGATATGGAATTGTACAAGCATTTCAAAGATCACCATTTCATTGATGATGGATTCATCTTGATTAATATAGGTTCAAGAAATGTGAACGAAGACATCGATGAATCTAATATGAACAGCGCGGAGATTGACGACGAAGACTTCGTCTTCGACAACTCTGATTACAAATCGGATTTCAATCCGAAGTACGTCAAGTTCTGTTTCGACGAAAGGGTTGTCGATGTAGATAATTCAGTTTCATGCGATTACTGCAGTGAAGAGTGTGACGATAATGCCAGTTTTCTCGAACATTTAAGCGTTAAACACGAATTTCAGGTAGGTTGCTACATTTCGCAATGCCAACTATGTTCTTCGACTAAGAAGCATATAATGCGGAAACATTTGAACAAATACGAAGAGATCAGAGCGAAGCCCTACGAGTGCAAGATATGCCACAAATCGATATTCGCCATAGACACGAGGATTCACATCTTGGAGAAGCACAGCGATTCTTTACCCGATTTGGATTTGAAGCGTTTCGGTGTTAAGTGCAGATTCTGTGAGGAAATGTTCTGGGAGACGGGGCCGATGGAGAAGCACGAATTGCTCGAACATCTAGATGACAACAAGCAGCATTTCTTCGAGTGCTCCAAATGCGAGAACACTTTTTGCAGCTTGGATAGTCTGAGGAAACACGACGACTGCGAAACGTACACGGACGTCACGTATCAATGCACCATTTGCCATTTAGTTTACGCGAGTATTCCGAAGATCAGGGAACATTTCAACGATGATCATCCGACAACGTCGTTGTTCTTCTGCCCTTATCCCGATTGCGAGAAGAATTTCACGGTTCTGAGGTACGCGAAACATCATATGATCGAAATGCACAAGAGGAAGAACAAATTGATGGCTCTCAAGGAGTCCACTTTAGAGTGCAGCATTTGCGAAAAAAAATTCACAAAGATGAACTCACTTAAAATACACATGAGCTCTCATGGGAGAGGTTTCAAGTGCAAGGTCTGTGCAGAGAAGTTCGACACAGTTGAAAGCAGAAACTTCCATTTCAACAAGGAGCATTTCGAGGAATCTCTGTACAGGTGCCAAATATGCCAGAAATCGCATCCCAGCAAAAGGGCGCTCAACCTTCACCACAAGATACACCACATGGAGCACCGAAAGGCCATCTGCAAAATCTGCAACAAAGAAGTCGGCATCGTCTACATGAAGGAGCACATGTTGATCCACAACGGCCCCATGATCCAATGTCCTCACTGTCCGAAGTCTTTCACCGCCAAATGCAACCTCCGCAGACACATCAGGTTGCACACGGGCGAAAAACCGTACACTTGCCCCTACTGTCCGAAGACTTTCAGCGACAAAGGAGCGTGCAACATGCACGCCAACATTCACACCAGAAAACTGTCGGTCACTTGCGAAGTCTGTGGCAAGGAGTTCAGCAAACAGCAGAAGTTGTTGGTCCACATGAAACGGCACACGGGCGAAGGTATGGAGAAATGCGAGGTTTGCGGAAAAGAGTACACGACCAATACGGAATTGCGGAAACACGTGTCCTTGCAGCACAAGGAATTGCTGGATCACAACACGCAGTTTATCTGCCATTGCGGCAGGTTCTTCACCTCCGAGCGATTCCTCAAATTGCACATAAGCAAAGTCCACGATCCTACTAAAGAGGTGAAAAAGAGGAACCAaccaaagaaaatcaaatgcTTTCAATGTCTGCTGTGCCAAAATTACTATTCGCTGAGAACGATCATCGACAATCATCTGAGAACTGTTCACAAAGTGGCGAAAAAGAAATGTTCAAAGAACATGCGGCAGTTAAACGCAAGTGAAGCCATGGTGCTTCAAGCGGAGACGCCTAACATCTTCGAAGAAGATGTGAAGACAGAGGAGATTCCTAAACTCGACGAAGAAGATGCAAAGAAAGACGAGATTCCTAAAGTCGACGAAGAAGATGCAAGAAAAGACGAAGACGAAGATAATGTGAAGATTAATAAAGTCGATGAAGATAACGCTAAAGAAACGGATACAAAGAGACTCGATCGTAGAAAGTTGAAAACGCCTTCAAAATGTAccacataa
Protein Sequence: MDVEEDDQVIRKSSVSINTKKKSGKRNIISFLPPKKRVHNVEESLDRVYMFHRLVAFPNDDLALQNKFNAKRDLKYICNFCEKPYFNHMKMKLHMLLNHDVKYCKICDLFLLDEEDVRRHNENVHAYCKCQICQKSITEDLEEHYMENHDAKICKYCHQVMRPSSHYETHLLEKHGVKKNGLVSMHEENIIGISDGINFHCNLCGPACNKLFFGHFCYYHKINIYVLADILKRLDIEIKQFNTIKTDELEIIVGNDKFCNLCPKTVPKSFHRVFCENYLPCKLCFEIFENTELLADHEKETCASRDESQCGLCKENLTEDHLMIKHKTSVFERKLINYKCNSVYCALCDQLLNDMELYKHFKDHHFIDDGFILINIGSRNVNEDIDESNMNSAEIDDEDFVFDNSDYKSDFNPKYVKFCFDERVVDVDNSVSCDYCSEECDDNASFLEHLSVKHEFQVGCYISQCQLCSSTKKHIMRKHLNKYEEIRAKPYECKICHKSIFAIDTRIHILEKHSDSLPDLDLKRFGVKCRFCEEMFWETGPMEKHELLEHLDDNKQHFFECSKCENTFCSLDSLRKHDDCETYTDVTYQCTICHLVYASIPKIREHFNDDHPTTSLFFCPYPDCEKNFTVLRYAKHHMIEMHKRKNKLMALKESTLECSICEKKFTKMNSLKIHMSSHGRGFKCKVCAEKFDTVESRNFHFNKEHFEESLYRCQICQKSHPSKRALNLHHKIHHMEHRKAICKICNKEVGIVYMKEHMLIHNGPMIQCPHCPKSFTAKCNLRRHIRLHTGEKPYTCPYCPKTFSDKGACNMHANIHTRKLSVTCEVCGKEFSKQQKLLVHMKRHTGEGMEKCEVCGKEYTTNTELRKHVSLQHKELLDHNTQFICHCGRFFTSERFLKLHISKVHDPTKEVKKRNQPKKIKCFQCLLCQNYYSLRTIIDNHLRTVHKVAKKKCSKNMRQLNASEAMVLQAETPNIFEEDVKTEEIPKLDEEDAKKDEIPKVDEEDARKDEDEDNVKINKVDEDNAKETDTKRLDRRKLKTPSKCTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -