Basic Information

Insect: Nicrophorus vespilloides
Gene Symbol: chn
Assembly: GCA_001412225.1
Location: NW:194241-253478[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.4 2.3e+02 1.9 0.7 1 10 151 160 151 174 0.71

2 10 0.00026 0.018 14.9 0.7 1 23 249 271 249 271 0.98

3 10 0.00057 0.039 13.8 4.0 1 23 277 300 277 300 0.96

4 10 0.0013 0.087 12.7 4.0 1 23 387 409 387 409 0.98

5 10 0.049 3.4 7.7 0.1 1 23 413 436 413 436 0.96

6 10 0.54 37 4.5 0.3 3 23 441 462 440 462 0.93

7 10 0.00018 0.013 15.4 0.6 1 23 599 621 599 621 0.98

8 10 0.00022 0.015 15.1 0.3 1 23 642 664 642 664 0.96

9 10 2.5 1.7e+02 2.4 1.9 1 20 702 725 702 729 0.88

10 10 0.028 1.9 8.5 3.2 1 23 735 758 735 758 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.4	2.3e+02	1.9	0.7	1	10	151	160	151	174	0.71
2	10	0.00026	0.018	14.9	0.7	1	23	249	271	249	271	0.98
3	10	0.00057	0.039	13.8	4.0	1	23	277	300	277	300	0.96
4	10	0.0013	0.087	12.7	4.0	1	23	387	409	387	409	0.98
5	10	0.049	3.4	7.7	0.1	1	23	413	436	413	436	0.96
6	10	0.54	37	4.5	0.3	3	23	441	462	440	462	0.93
7	10	0.00018	0.013	15.4	0.6	1	23	599	621	599	621	0.98
8	10	0.00022	0.015	15.1	0.3	1	23	642	664	642	664	0.96
9	10	2.5	1.7e+02	2.4	1.9	1	20	702	725	702	729	0.88
10	10	0.028	1.9	8.5	3.2	1	23	735	758	735	758	0.93

Sequence Information

Coding Sequence: ATGGAAGTGGCAATGCCTACGATGTCGGGCAACGCTATAGACTGTTACGAGGACATGTTCAAGGAGATCACCAGGAAGCTGTACGGTGAAGATGGCTTGCCCGACCTCCCGCAAACCGATCGGAATCACCAGGCGGCCCAAGATCGGGGTCTCACGCCAATCGATTACGACGTAGACACGCCGATCCTGAAGCCCGAGGAACATCTGACTGCATTCGGACTAGCCGCACTCATGCAGAACGGTTTCCCTTCGCCCTTCCAGCAGCACAAGCCCAATCCAAACTTCGAGGACAAATGGATAATAAGCGAGGACAACATCCCCTGGACGCAATCGAAAATAGCTAGTTACAATCCGGCACAGAAGCTGTTCCGATGCGCGGAATGCGACTGTGTCGGTTACCTTCCCCGAGTAGCAGAACACTGGCTTGGCACGCACTCCAACCTGAGGGTCTTCCAGTGTCCGCAATGCCCCTACGAGAGCGCGTGGGCCAGATGCGTCCGCATGCATCTTACCCGACAACACAACATCAACACCGAGGAGGCCACGGACGCGCTTCTCAAGAACAATCCTGTCCTTCAAGAAGTCACACGGTTCCTGCAAAGACTGAAAACTAGATTAGAGAGCAGCTGTTCGAAACCGCCAGCGGCGAACATAGATGACTTTCAGAATATTAACGCTAACCGACAGGTGCAGCAAACCATAACAAATCAGCAGGAAACTCCCAACGCCTCTGGTAGCAAACGGTATAGCTGTAGCTACTGCCCGTACGCCACTGATAGACGAGACTTGTTCACTAGGCACGAGAACATCCACAGAGAGGAGAAGCCTTTCCAATGTTATGTTTGCCAGAAACAGTTCAACCGAGCAGATCACGTGAAAAAGCACTTCCTTCGGATGCACCGCGAACACGTCTACGATCTTAACAGGATACGTCGTCACCCACCGAAGAACGCTTCCGGAATGTCTTACTATCAGAAGTATAACAATAACACAACCGAAGAGCAGCCCGAAGcgaacataaataattgcatcaaCAATGCGATCACAATTCCAAATGGGTTCAACAACATATCGCGAACTCTACCGAACAACCGCAATAATGTTGAAATGAAACCTAAGAGCTCCAAAGTTGGTTCGAAGAAGAAGGGAGAGAAGCGTTTCAGTTGCTGCTACTGCTCTTGGTCAGGTGTCGATAACTGGTGTCTGAAAAGGCACATGAATACACACCTGAAGCCATTCGTATGCGGTTTGTGTGACTACAAAGCCGCGAGATCAGAGCGCTTGGCCACGCACGTGTTGAAGGTGCACAACAAACGTGCCTGTAGCAAATGCACGTTCCTTGCAGACGATCAACAACAGCTAACGGCTCATCAGCAGGAGCAGCACCCTTTGGAGCAAAGGAACAATAGGACGTCGTCCGCTGCGAGCAACGTGCTGAGGAACACGAGCTTCGCAAATACAGCCGTGACGAGTTCAGGTATAAACTTTGGGCAAAGTCAGCCGCCCTTAAAAAATTCCGATATAACAGCAGCAGCCGCGCTGCTTCAGGGAAATCGGCTTCTGCAGCCGGTGGAATCGAAGCAGTGGAAGCCGCACATACCAAAGCAACACGGGGCGGCGCGCCTCTTCAACTACATGGAGGCCAGCGATGGATCTGATCCGGACTGTGATAGTAGTTGCGGTGCAGAGGACATGAGTCGTCTAAGTCACAGGGTCCAGTCGGATTTTCTTGAAGCGGGGGATGTAGGTAGCTGCACTCCAGACGAAGAAACCGGGGAAATGGAACTTCCGCTCTTCGTCTGCCAGACTTGTGGATGCGAGTTCGAGGACGACGGTTCATTGGAAACGCATCAGCTGACACACAAATCCAGCACCACATCTCCCgctaaaaaacaaaaagaaaatgtcaACCCTAGACATAGGTACCAGTGTAAATACTGCAGTATGACCTTCACTAGTCAGGTGGCCGTGATCGGTCACATGACCGGCCATTCGACTCTCAATCAGGAAGCTCGTCGGTCGCGCAAACAGATGTTGCCGAAGAGAATCTCCAACGGTAATACCAAGAAGCCTACGATCAAATCGAAAGCCTCCAAAAAGCTGTACTATTGCTTCAAGTGCAAAGGCAAGAGCATCCACCGATTCAACAGCGAGAGTAACCTAATACTGCACAACTACTGGATGCACTCTAAGAAGAACGAGTTCCCCTGTGAGCATTGCGAACTTAAGTTCGAGCACCGTTACCAGATGATCCTGCATTCGAGCAAGGAGCACGTCGAGAAGAAGACCAAGGATACGGCACCTGTTGCTGCGGAAGATCCGCACTTCATGCACACCAACCTGGCCCTACCTGCGGCACCCGCTGTACCTGACATAACAAACGCATCAGCCAGTGTGCATAAGCTGGGTATGTACTTCGACCACTCCTTCAACACTGGCCTCAATGGACACATGCCTCTTATAATACCCACATTTCCTCCCAACTaa
Protein Sequence: MEVAMPTMSGNAIDCYEDMFKEITRKLYGEDGLPDLPQTDRNHQAAQDRGLTPIDYDVDTPILKPEEHLTAFGLAALMQNGFPSPFQQHKPNPNFEDKWIISEDNIPWTQSKIASYNPAQKLFRCAECDCVGYLPRVAEHWLGTHSNLRVFQCPQCPYESAWARCVRMHLTRQHNINTEEATDALLKNNPVLQEVTRFLQRLKTRLESSCSKPPAANIDDFQNINANRQVQQTITNQQETPNASGSKRYSCSYCPYATDRRDLFTRHENIHREEKPFQCYVCQKQFNRADHVKKHFLRMHREHVYDLNRIRRHPPKNASGMSYYQKYNNNTTEEQPEANINNCINNAITIPNGFNNISRTLPNNRNNVEMKPKSSKVGSKKKGEKRFSCCYCSWSGVDNWCLKRHMNTHLKPFVCGLCDYKAARSERLATHVLKVHNKRACSKCTFLADDQQQLTAHQQEQHPLEQRNNRTSSAASNVLRNTSFANTAVTSSGINFGQSQPPLKNSDITAAAALLQGNRLLQPVESKQWKPHIPKQHGAARLFNYMEASDGSDPDCDSSCGAEDMSRLSHRVQSDFLEAGDVGSCTPDEETGEMELPLFVCQTCGCEFEDDGSLETHQLTHKSSTTSPAKKQKENVNPRHRYQCKYCSMTFTSQVAVIGHMTGHSTLNQEARRSRKQMLPKRISNGNTKKPTIKSKASKKLYYCFKCKGKSIHRFNSESNLILHNYWMHSKKNEFPCEHCELKFEHRYQMILHSSKEHVEKKTKDTAPVAAEDPHFMHTNLALPAAPAVPDITNASASVHKLGMYFDHSFNTGLNGHMPLIIPTFPPN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01097003;
90% Identity: iTF_01058710;
80% Identity: -