Nves006274.1
Basic Information
- Insect
- Nicrophorus vespilloides
- Gene Symbol
- -
- Assembly
- GCA_001412225.1
- Location
- NW:5018-10994[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.23 16 5.6 0.9 1 21 158 178 158 179 0.91 2 11 0.077 5.2 7.1 0.1 3 23 216 238 214 238 0.78 3 11 4.3 2.9e+02 1.6 2.6 2 20 278 298 277 301 0.87 4 11 0.61 42 4.3 3.0 1 14 309 322 309 332 0.79 5 11 0.72 49 4.1 0.5 1 23 339 362 339 362 0.91 6 11 0.00077 0.052 13.4 0.8 1 21 368 388 368 391 0.87 7 11 1.8e-06 0.00012 21.7 0.5 2 23 405 427 404 427 0.93 8 11 2.6e-05 0.0017 18.1 2.0 1 23 433 455 433 455 0.97 9 11 0.00087 0.059 13.3 2.0 1 23 461 483 461 483 0.97 10 11 0.029 2 8.5 5.9 1 23 489 512 489 512 0.98 11 11 0.29 19 5.3 0.1 1 23 519 541 519 541 0.96
Sequence Information
- Coding Sequence
- ATGGACGTTACAATACCAGAGGATATttcttatctaaattttctaaatgaaaaGAACACGAGTTATCTGCTTCAAAATAATGGGTTGGAAATACAGGAGGTTGACTCGTTGACTGATGAGCCTATGCTCACTGAGTTCGAGGATGGAAATTCAGCATGGACCATAAACGGAGTTCCTGTTTATTTGAACACGTTAGCAGAGGCAGAAgATCAAGAAACAGATGAAAACGTTCTGACTAAAACTGTGGAAAATCCAGAGGAAACAACTGAATATCCTTTGGATATATCCAAAGGCTTCTTGACTTCTTCCGGATTATTCTTATCCAGTGATGTGCTGCTGCAGCTGAACCTGCAGAACGATCAGATTAAAACCGATGTTGTGACTCAGACCAATGTGGCAAAGAGTGAGGAGGAGGTGAACTCTGATGCGCTGAAATCGAGCGTCGATGATCTGATCGAGGTAGTCTCGATGCACAGATGCAAGCATTGCTCGGCGTACTTCGAAAGTTACGATGATATCGTGGAGCACGTGAAGAGCGTCTGCTTGGAGAAGGTGCAGAAGATCATACCGCCGAAAGTGCAGAGGATGAGTTCCATACTCAAAACAGCCGACAACAAGAACGCTGTGGTCAAGGATATTTATCTGTGCGGGATGTGCGAGGGCGTTGGATATGAAagtattgataatttaaagaaacacATGTTAACTAAACACAATTTGACTTATAAGGGTGAACTTGAGGCCAAGACTAATGCAGAGGAGAAGCCAAAGAGTACCAATGGTTTGTTTCAAAGTATCGTGAATAAGCAGCAGTTGGAAGGGAAGAGAGTTAAGTGTCTTATAAAAGGTTGTGATTCGCGTTTTTCGAAACTCGAGTTGATGATGCGCCATCACTCGTGTCACGTCGACGAAAACAAGAAGAAGTTCAAGTGTCCGGAATGCGACCAAATTTTCTTCGCTTGGAGGATGTGCAGGGCTCATCTGTGGAAGTGCCATAAAGTCGATATAGGACTTTACACGTGCGCCGTCTGCAACGTCTTCAAATCACAATCTCCCCatagTTTATTGGTGCATATGGCCAGTCACGACACGGAGAAACCATTCCTTTGCTCGACTTGCGGCCACGGTTTCAAGCAATTGGCGCAGCTCAGAAATCACAAAGTTGCGGTGCACAAGGAATCCATTGAgaaCGCTAATTGGATAGCCAAAGTCAGTTGCACGACTTGCGGTCGCATTTTCTCAACTTCTAAGAATCTCAAGAAGCACGTTCAGGCCGTTCACAACAAGTACAAGCCTTTCATATGCAACATCTGTGGTCATTCTTGCGCAAGAAAAGCAATGCTTGAGTTGCATCTCAGGCAGCACACTGGGGAAAAGCCTTACAAATGTCAGATCTGCGATTACAAAACTGGGGATCACAATTCGCTGAGGAGACACGTCGGCCGGCATTACGGGGTGCTGAAATATTCGTGTCCGCATTGTAGTTATCAATGCATGCAGTCGACTGCGTACAAGATGCACATCAAAAGGAAACATCCGGGCAAAGGTGGAGTCTTCGCATGTCTGGTTTGTTCTTACGAAACTGTCAACGAGCAGATGTACAATGATCACGTCAGAGGACACGAGCTTGCTAACGTTCCCATCAGTAaACTGCAAACGACAAGTGGAGCAAGTGATGCACCAATTGAAACTACTGTGGCTGAATTGAAAGtgGTGCCGAGTGTTGAGGATGAGGAGACGCAACCGGGATTGTTCAGTTCGGATAATTTGGAGGAGTTGGCCGTGGATACCGGTGGTATAACGATTCCAGCCGGCTCAGAAATGCAGGTTATGGTTCTTGTGCAATTTCCCTTGGATGCTTTggatttgaattaa
- Protein Sequence
- MDVTIPEDISYLNFLNEKNTSYLLQNNGLEIQEVDSLTDEPMLTEFEDGNSAWTINGVPVYLNTLAEAEDQETDENVLTKTVENPEETTEYPLDISKGFLTSSGLFLSSDVLLQLNLQNDQIKTDVVTQTNVAKSEEEVNSDALKSSVDDLIEVVSMHRCKHCSAYFESYDDIVEHVKSVCLEKVQKIIPPKVQRMSSILKTADNKNAVVKDIYLCGMCEGVGYESIDNLKKHMLTKHNLTYKGELEAKTNAEEKPKSTNGLFQSIVNKQQLEGKRVKCLIKGCDSRFSKLELMMRHHSCHVDENKKKFKCPECDQIFFAWRMCRAHLWKCHKVDIGLYTCAVCNVFKSQSPHSLLVHMASHDTEKPFLCSTCGHGFKQLAQLRNHKVAVHKESIENANWIAKVSCTTCGRIFSTSKNLKKHVQAVHNKYKPFICNICGHSCARKAMLELHLRQHTGEKPYKCQICDYKTGDHNSLRRHVGRHYGVLKYSCPHCSYQCMQSTAYKMHIKRKHPGKGGVFACLVCSYETVNEQMYNDHVRGHELANVPISKLQTTSGASDAPIETTVAELKVVPSVEDEETQPGLFSSDNLEELAVDTGGITIPAGSEMQVMVLVQFPLDALDLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01058691;
- 90% Identity
- iTF_01058691;
- 80% Identity
- -