Nves008513.1
Basic Information
- Insect
- Nicrophorus vespilloides
- Gene Symbol
- -
- Assembly
- GCA_001412225.1
- Location
- NW:10792-27179[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 3 2e+02 2.1 2.0 1 21 22 42 22 43 0.92 2 16 0.25 17 5.5 2.6 1 22 392 413 392 416 0.91 3 16 1.2 79 3.4 1.7 3 22 429 448 428 451 0.90 4 16 1.2 85 3.3 1.3 2 20 473 491 472 496 0.87 5 16 0.00033 0.023 14.6 1.9 3 23 512 533 511 533 0.95 6 16 1.3 88 3.3 0.3 1 21 538 558 538 562 0.80 7 16 0.06 4.1 7.5 0.6 1 23 574 597 574 597 0.96 8 16 0.00063 0.043 13.7 0.0 3 22 604 623 603 623 0.94 9 16 9.9e-05 0.0067 16.2 1.2 1 23 635 657 635 657 0.97 10 16 0.0039 0.26 11.2 1.4 1 23 674 695 674 695 0.98 11 16 1.1e-06 7.7e-05 22.3 0.9 1 23 701 723 701 723 0.99 12 16 1.1e-05 0.00075 19.2 1.0 1 23 743 765 743 765 0.96 13 16 0.19 13 5.9 0.4 2 23 771 794 770 794 0.93 14 16 0.014 0.97 9.4 1.1 1 23 800 822 800 822 0.97 15 16 0.024 1.6 8.7 6.6 1 23 828 850 828 850 0.98 16 16 0.00013 0.0089 15.9 0.2 1 21 856 876 856 877 0.94
Sequence Information
- Coding Sequence
- ATGAGGTCCAATTTTCGTGGATGCACAAAGATGATCGCCGATTACGACGACGTGGAGGACTCGCACTTTTGCCTGAAGTGCCATCAGACCATCACCGGCTTGGACAACTACGTGACCCATCGCAAGAACAACTGCGTCAAATCGGAACCCGATCCTCCAAAGTCACCCCCATCCAGCGAACTCCTCCCGCAAGATTATGCCTTCAGTCTGAAAGCCGACGACTTCTTCTCCAGCCTCGAGTTGCAGAGTAGCAGCAAGAAGACGGTCGCCCCATCGACGAGTGGTAAAACCTTCACCGGCATTCTGACGCGCAGCAAGACTTCAGCGGTAATTCAGGAAAAGGAGCAATCAAAATCTGGGAAGAACGCTTGGATAGGAGGACATCAGTTGAAGGAGTTGGGTACCGGTGATAACCACACTAAGCTAATAAAAGCAGTTGATAATTTAAGCAGAAAcgcttcaattaaaaaagaagatgTAAGCAATGCGGTTTATACCGATGAAGCCAGTGAAGACACGAATTACGAAGACGACGATTTCGATGATGAATACATTCCCAGCGGTGGTAAGTGGGCGCCGCAGTACACGGAACCGGCACCTAGTTACACCGGTGGTAAATGGAAGCCGAAGAGGATGAGTCTGATACCACCGCAGAGTCACACCAAGGGCAAATGGAAACCGGAAATCCCGGAAGCACCGAATCCACCCAGCAAGTCGAAGATCAAAATCTCGAGTCAGTCGAAGAAGTCGGGAAAGGATTTCTGGTGTGTACCGTGCAATCGAAAATTGGCCTCGAAAGTGGTTTATGACCGGCACCTGAAGTCCGAGCTGCATTTAAAGCGGACGCTGCAAGAGTTCGACGACTCGCCGCATTTGAATACAAAACCCGATAAAGAAACGAAAGCGAAACCCGTTGAATATTGGCCGCATGCCGTCGGAGAAGACAATGAGGACACTATGAAAAATGCCGTCGAGCCGAAGGGCGGTCAGAAGAGGAAGAGGGCGGCAAGGAGGATTTATGTGAAATGCTCGGTATGCAAGAGTCGCGTTACCACTCACTTGATGGGCAAGCACCTGATCTCGCATTACCATTGCCGCAAAGGCGACATCAACACGCCGGAAGCCCACGCCATGGTCCTCGACAACATGCACAAAATCGTACTGCATTCACCCTACCAATGCGGCACCTGCAAATTCTACTTCAACACCCACCTCCAATTCTTGCAGCACTGGAACTCCGCCGACCACAAAAGCACCATGGACAAAACTCCCGGCTACATCCTATGCTCTTTCTGCAAGTTCTCATGCGAAGACAACGACACGATGTTCTCGCATCTTATATCCATCGAGCACAAAGAGGTCATCTCTGTTATTAACCGCTCTGTGCCAatcgttattaaaaaaattagacCTCTGAAATGCTCCACTTGCTCCGAAGAGTTCATGCTAAACATCCAATTGAGGATCCATTGTAAAACCGAAGACCATCAATATTCGAGCACCTCTACCAACGAATATCAGATGAAGGAAATTTGTGAACACTGCAACCTGACATTTAAATCTCTAAAAACCTTGCAAGTCCACATATCTAATAACCACCAAATCAAGAATTTTTACTGCTCAATATGTTCCTTGCAATTCGATTCGTTGGAAGAGAGTGTCTCGCATAGGAAGAGCCCAGAACACAGATGCAAAGCCCAGAACAAACCGGAACCAATACACAAGTGCGAATACTGCTCTTTGATTCTTCAAACCTTCGTAGCATTGAAAGACCACTTAAGAGAAGCTCATCCTGAACGCTTACCATCTTGCGTCCAATGCGGCGAAAAGTTTTCGGTGCCTCAAGAGCTCACCGTACACATCCGTTCGAAGCTCTGCAAATTCACCATCATCGATAACCCGTTCAAATGCAACAAGTGCCCATACAGCACCAAATCCAATTCGGAACTGCTATACCATCAAGCTTTGCACACCGAAGGCATTCCGCAGACGGACAGCAATTCGAAAACCACATACCATTACAAATGTCCCCTGTGCACATTTACCTATCCAAAGTCCTCTCTACGTTATCACATCCAGAACCACACCAACGAGAAGTCGTACAGGTGCGACGTTTGCGGCGCCAAATTCGCACGTAAGAGCCATTGGAAAGCCCATCTGAAGATCCACGAGGATCCGAAGCGAGAGTACAGATCACCCACGGATGGAAGGACGAGGGAACACAGCTACCTGTGCGCCATTTGCGGCGTCCACTTCAACAAAAACTCGACGTTGCAAAAGCATATGCTGGTGCATACTGGAAAGACGGTCAGGTGTCCGGTGGAGACTTGCGTCCATTTTGCGAGGAGCGAAGCGGACCTGAAGAGCCACATGACGACGCATTCGGACGAGAGGAACTATCCTTGCGATCTGTGCCAGTACCGAGGCAAGAGTGTCCAGCAGCTGAAACGCCATAAGACGATGCACGAGGATGGAAAGAAGTTCAAATGTCAGCACTGTTCGTTCACGACTCGGCTCCAATTCCATTTGGTTCGGCACGAGCGAATCCACACCGGTTCGAAGCCGTTCGTCTGTCCTCATTGCGATTACCGATCCAACAATTTGGAGAATCTACGAAAGCACGTCATGGCCACGAACAAGCATCCGGGACGATGCATGTACGAGTGCAAGTTCTGCGAAGGAAGCAAACATTACAAGACGAATTTAGCTAGGGACTTCAAGGTTCATCTGATGATGGTGCACGGAGATGATTTTCCCACGCAGAACGATGcgagtaattatataacaggGATCTGTCACGGCGTGGAGTCGGTGCGTCCGAAGGAGAAGACCGACGAAGACGTTGATGATGACCTGGAGGAGATCAAGATCGAAGTCGTTCCGAAGGTTGAGGTCAAGCAGCACGGCAGCACCATGTTCCCCGTGTTTATCGTCTCCAAAGAGGAGGGTGCAGTCGTGGAGAGGAGCACATGGACTTTTGAAGCCGAAGAAAACAGCAACCTCGACACGTTCAACGACGAGAACGCCAGTTTGTTTCAAGAGcatttccaataa
- Protein Sequence
- MRSNFRGCTKMIADYDDVEDSHFCLKCHQTITGLDNYVTHRKNNCVKSEPDPPKSPPSSELLPQDYAFSLKADDFFSSLELQSSSKKTVAPSTSGKTFTGILTRSKTSAVIQEKEQSKSGKNAWIGGHQLKELGTGDNHTKLIKAVDNLSRNASIKKEDVSNAVYTDEASEDTNYEDDDFDDEYIPSGGKWAPQYTEPAPSYTGGKWKPKRMSLIPPQSHTKGKWKPEIPEAPNPPSKSKIKISSQSKKSGKDFWCVPCNRKLASKVVYDRHLKSELHLKRTLQEFDDSPHLNTKPDKETKAKPVEYWPHAVGEDNEDTMKNAVEPKGGQKRKRAARRIYVKCSVCKSRVTTHLMGKHLISHYHCRKGDINTPEAHAMVLDNMHKIVLHSPYQCGTCKFYFNTHLQFLQHWNSADHKSTMDKTPGYILCSFCKFSCEDNDTMFSHLISIEHKEVISVINRSVPIVIKKIRPLKCSTCSEEFMLNIQLRIHCKTEDHQYSSTSTNEYQMKEICEHCNLTFKSLKTLQVHISNNHQIKNFYCSICSLQFDSLEESVSHRKSPEHRCKAQNKPEPIHKCEYCSLILQTFVALKDHLREAHPERLPSCVQCGEKFSVPQELTVHIRSKLCKFTIIDNPFKCNKCPYSTKSNSELLYHQALHTEGIPQTDSNSKTTYHYKCPLCTFTYPKSSLRYHIQNHTNEKSYRCDVCGAKFARKSHWKAHLKIHEDPKREYRSPTDGRTREHSYLCAICGVHFNKNSTLQKHMLVHTGKTVRCPVETCVHFARSEADLKSHMTTHSDERNYPCDLCQYRGKSVQQLKRHKTMHEDGKKFKCQHCSFTTRLQFHLVRHERIHTGSKPFVCPHCDYRSNNLENLRKHVMATNKHPGRCMYECKFCEGSKHYKTNLARDFKVHLMMVHGDDFPTQNDASNYITGICHGVESVRPKEKTDEDVDDDLEEIKIEVVPKVEVKQHGSTMFPVFIVSKEEGAVVERSTWTFEAEENSNLDTFNDENASLFQEHFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -